Evidence map›Paper›PMID 11264386›Full record

ArticleJournal of virology2001

Nef-induced CD4 downregulation: a diacidic sequence in human immunodeficiency virus type 1 Nef does not function as a protein sorting motif through direct binding to beta-COP.

K Janvier, H Craig, S Le Gall, R Benarous, J Guatelli, O Schwartz, S Benichou

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 49 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. The activity of Nef on HIV-1 infectivity.Frontiers in microbiology · 2014
    Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

K JanvierInstitut Cochin de Génétique Moléculaire, INSERM U529, Université Paris V, Paris, France.
H Craig
S Le Gall
R Benarous
J Guatelli
O Schwartz
S Benichou
Institut Pasteur · FRUniversité Paris Cité · FRUniversity of California, San Diego · USInserm · FR

Funding

VirologyP30AI036214 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Maile Ann Young Karris · 1994 to 2026
$78.4M
HIV-1 NEF AND VIRAL INFECTIVITYR01AI038201 · NIAID · VETERANS MEDICAL RESEARCH FDN/SAN DIEGO · PI GUATELLI, JOHN C. · 1996 to 2013
$4.1M
HIV 1 NEF and InfectivityR21AI038201 · NIAID · VETERANS MEDICAL RESEARCH FDN/SAN DIEGO · PI GUATELLI, JOHN · 2003 to 2003
$331k
NIAID NIH HHS AI36214NIAID NIH HHS AI38201NIAID NIH HHS P30 AI036214NIAID NIH HHS R01 AI038201NIAID NIH HHS R21 AI038201
6 · The paper itself

Abstract

The Nef protein from the human immunodeficiency virus (HIV) induces CD4 cell surface downregulation by interfering with the endocytic machinery. It has been recently proposed that binding of HIV type 1 Nef to the beta subunit of COPI coatomers participated in the Nef-induced CD4 downregulation through recognition of a novel diacidic motif found in the C-terminal disordered loop of Nef (V. Piguet, F. Gu, M. Foti, N. Demaurex, J. Gruenberg, J. L. Carpentier, and D. Trono, Cell 97:63-73, 1999). We have mutated the glutamate residues which formed this motif in order to document this observation. Surprisingly, mutation of the diacidic sequence of Nef did not significantly affect its ability (i) to interact with beta-COP, (ii) to downregulate CD4 cell surface expression, and (iii) to address an integral resident membrane protein containing Nef as the cytoplasmic domain to the endocytic pathway. Our results indicate that these acidic residues are not involved in the connection of Nef with the endocytic machinery through binding to beta-COP. Additional studies are thus required to characterize the residues of Nef involved in the binding to beta-COP and to evaluate the contribution of this interaction to the Nef-induced perturbations of membrane trafficking.

Indexed as

Down-RegulationHIV-1Adaptor Protein Complex gamma SubunitsAmino Acid MotifsAmino Acid SubstitutionBiological TransportCD4 AntigensCD8 AntigensCoatomer ProteinEndocytosisGene Products, nefGlutamic AcidHeLa CellsHumansMacromolecular SubstancesMembrane ProteinsAdaptor Protein Complex gamma SubunitsCD4 AntigensCD8 AntigensCoatomer ProteinGene Products, nefGlutamic AcidMacromolecular SubstancesMembrane Proteinsnef Gene Products, Human Immunodeficiency VirusRecombinant Fusion Proteins

Identifiers

PMID11264386
PMCPMC114888
OpenAlexW2010012777

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.