Evidence map›Paper›PMID 11257127›Full record

ArticleThe Journal of cell biology2001

Internal modification of U2 small nuclear (sn)RNA occurs in nucleoli of Xenopus oocytes.

Y T Yu, M D Shu, A Narayanan, R M Terns, M P Terns, J A Steitz

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 60 citations in OpenAlex.

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  11. The recruitment of the U5 snRNP to nascent transcripts requires internal loop 1 of U5 snRNA.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2012
    Article
  12. Pearls are novel Cajal body-like structures in the Xenopus germinal vesicle that are dependent on RNA pol III transcription.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2012
    Article
  13. Article
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  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Y T YuDepartment of Molecular Biophysics and Biochemistry, Boyer Center for Molecular Medicine, Howard Hughes Medical Institute, Yale University School of Medicine, New Haven, Connecticut 06536, USA. yitao_yu@urmc.rochester.edu
M D Shu
A Narayanan
R M Terns
M P Terns
J A Steitz
University of Georgia · USHoward Hughes Medical Institute · USYale University · US

Funding

Small RNA-based immunity by CRISPR-Cas complexes of Pyrococcus furiosusR01GM054682 · NIGMS · UNIVERSITY OF GEORGIA (UGA) · PI TERNS, MICHAEL P, TERNS, REBECCA · 1997 to 2015
$4.8M
Vertebrate Non-Coding RNPs: Integrating function, biogenesis and survivalR01GM026154 · NIGMS · YALE UNIVERSITY · PI STEITZ, JOAN A. · 1985 to 2014
$4.0M
AUTOANTIBODY PROBES FOR MAMMALIAN GENE EXPRESSIONR37GM026154 · NIGMS · YALE UNIVERSITY · PI STEITZ, JOAN A. · 1989 to 1998
–
NIGMS NIH HHS GM26154NIGMS NIH HHS GM54682NIGMS NIH HHS R01 GM026154NIGMS NIH HHS R01 GM054682
6 · The paper itself

Abstract

U2 small nuclear (sn)RNA contains a large number of posttranscriptionally modified nucleotides, including a 5' trimethylated guanosine cap, 13 pseudouridines, and 10 2'-O-methylated residues. Using Xenopus oocytes, we demonstrated previously that at least some of these modified nucleotides are essential for biogenesis of a functional snRNP. Here we address the subcellular site of U2 internal modification. Upon injection into the cytoplasm of oocytes, G-capped U2 that is transported to the nucleus becomes modified, whereas A-capped U2 that remains in the cytoplasm is not modified. Furthermore, by injecting U2 RNA into isolated nuclei or enucleated oocytes, we observe that U2 internal modifications occur exclusively in the nucleus. Analysis of the intranuclear localization of fluorescently labeled RNAs shows that injected wild-type U2 becomes localized to nucleoli and Cajal bodies. Both internal modification and nucleolar localization of U2 are dependent on the Sm binding site. An Sm-mutant U2 is targeted only to Cajal bodies. The Sm binding site can be replaced by a nucleolar localization signal derived from small nucleolar RNAs (the box C/D motif), resulting in rescue of internal modification as well as nucleolar localization. Analysis of additional chimeric U2 RNAs reveals a correlation between internal modification and nucleolar localization. Together, our results suggest that U2 internal modification occurs within the nucleolus.

Indexed as

Ribonucleoproteins, Small NuclearRNA Processing, Post-TranscriptionalActive Transport, Cell NucleusAnimalsAutoantigensAutoradiographyCell NucleusMicroinjectionsNucleic Acid ConformationOocytesProtein BindingRNA, Small NuclearsnRNP Core ProteinsXenopus laevisAutoantigensRibonucleoproteins, Small NuclearRNA, Small NuclearsnRNP Core ProteinsU2 small nuclear RNA

Identifiers

PMID11257127
PMCPMC2199211
OpenAlexW2047130372

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.