Evidence map›Paper›PMID 11250909›Full record

ArticleThe EMBO journal2001

5' cloverleaf in poliovirus RNA is a cis-acting replication element required for negative-strand synthesis.

D J Barton, B J O'Donnell, J B Flanegan

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 151 papers.

0numbers the graph read from it
0cells of the map it votes in
151citing papers in PubMed
11.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

151 citing papers in PubMed, 261 citations in OpenAlex.

  1. Article
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  7. Pervasive RNA folding is crucial for narnavirus genome maintenance.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  8. Review
  9. Article
  10. Article
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  12. Review
  13. Article
  14. Microorganisms · 2021
    Review
  15. Review
  16. Review
  17. Article
  18. Review
  19. Article
  20. Article

91 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

D J BartonDepartment of Biochemistry and Molecular Biology, College of Medicine, University of Florida, Gainesville, FL 32610-0245, USA.
B J O'Donnell
J B Flanegan
University of Florida · US

Funding

BASIC MICROBIOLOGY &INFECTIOUS DISEASEST32AI007110 · NIAID · UNIVERSITY OF FLORIDA · PI Stephanie M Karst · 1985 to 2026
$4.3M
MOLECULAR BIOLOGY OF POLIOVIRUS RNA REPLICATIONR01AI015539 · NIAID · UNIVERSITY OF FLORIDA · PI FLANEGAN, JAMES BERT · 1985 to 2010
$3.0M
GENETICS OF PICORNAVIRUS RNA REPLICATIONR01AI032123 · NIAID · UNIVERSITY OF FLORIDA · PI FLANEGAN, JAMES BERT · 1992 to 2006
$1.4M
NIAID NIH HHS AI 07110NIAID NIH HHS AI15539NIAID NIH HHS AI32123NIAID NIH HHS R01 AI015539NIAID NIH HHS R01 AI032123NIAID NIH HHS T32 AI007110
6 · The paper itself

Abstract

A cloverleaf structure at the 5' terminus of poliovirus RNA binds viral and cellular proteins. To examine the role of the cloverleaf in poliovirus replication, we determined how cloverleaf mutations affected the stability, translation and replication of poliovirus RNA in HeLa S10 translation-replication reactions. Mutations within the cloverleaf destabilized viral RNA in these reactions. Adding a 5' 7-methyl guanosine cap fully restored the stability of the mutant RNAs and had no effect on their translation. These results indicate that the 5' cloverleaf normally protects uncapped poliovirus RNA from rapid degradation by cellular nucleases. Preinitiation RNA replication complexes formed with the capped mutant RNAs were used to measure negative-strand synthesis. Although the mutant RNAs were stable and functional mRNAs, they were not active templates for negative-strand RNA synthesis. Therefore, the 5' cloverleaf is a multifunctional cis-acting replication element required for the initiation of negative-strand RNA synthesis. We propose a replication model in which the 5' and 3' ends of viral RNA interact to form a circular ribonucleoprotein complex that regulates the stability, translation and replication of poliovirus RNA.

Indexed as

Nucleic Acid ConformationBase SequenceGenetic Complementation TestModels, GeneticMutationPoliovirusProtein BiosynthesisRNA CapsRNA, ViralRNA CapsRNA, Viral

Identifiers

PMID11250909
PMCPMC145522
OpenAlexW2114329037

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.