Evidence map›Paper›PMID 11247609›Full record

ArticlePlant molecular biology2001

Expression of a membrane-anchored endo-1,4-beta-glucanase from Brassica napus, orthologous to KOR from Arabidopsis thaliana, is inversely correlated to elongation in light-grown plants.

M Mølhøj, B Johansen, P Ulvskov, B Borkhardt

Abstract read
PubMed Publisher
In one paragraph

Article in Plant molecular biology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 2 countries.

M MølhøjBiotechnology Group, Danish Institute of Agricultural Sciences, Frederiksberg C.
B Johansen
P Ulvskov
B Borkhardt
Czech Academy of Sciences, Institute of Botany · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A PCR fragment derived from a membrane-anchored endo-1,4-beta-glucanase cDNA was amplified using degenerated oligonucleotides and mRNA from oilseed rape (Brassica napus L.) siliques. Sequence analysis of the corresponding gene, Cel16, showed that the predicted Cel16 protein has high identity with the Arabidopsis KOR protein (94%). High-stringency genomic Southern analysis further revealed that Cel16 and KOR are most likely orthologous genes performing a similar function in both species. Northern blot and GUS analysis of transgenic Arabidopsis containing a fusion between a 2.0 kb Cel16 promoter fragment and the GUS reporter gene showed that Cel16 was expressed at a low level in the primary raceme, the young lateral stems, the elongation zone of the primary root and the older root base. By contrast, a high level of Cel16 mRNA accumulation was found in the young root and in the main stem carrying flowers and young siliques. Cel16 transcripts were localized to the apical meristem, cambium, primary xylem and cortex of oilseed rape stem tissue by in situ RT-PCR. A similar pattern of activity was found in the GUS analysis of transgenic Arabidopsis. Cel16 mRNA accumulation in the main stem was lower in the zone of most rapid cell elongation than in the subjacent, fully elongated internodes. Similarly, Cel16 transcripts accumulated to a higher level in leaves as they reached full size than during early leaf expansion. Analysis of the expression pattern in elongating, light-grown seedlings showed that Cel16 mRNA accumulated at a lower level in the elongating upper third than elsewhere in the hypocotyl. This is contrary to etiolated hypocotyls, where we found a higher expression level in the rapidly elongating upper part. This difference in expression most probably reflects a difference in cell wall assembly between light- and dark-grown seedlings.

Indexed as

ArabidopsisBrassicaCellulaseDNA, ComplementaryDNA, PlantGene Expression Regulation, EnzymologicGene Expression Regulation, PlantGenes, PlantHypocotylLightMembrane ProteinsMolecular Sequence DataPhylogenyPlant DevelopmentPlant ProteinsPlantsCellulaseDNA, ComplementaryDNA, PlantMembrane ProteinsPlant ProteinsRNA, Messenger

Identifiers

PMID11247609
OpenAlexW1555073838

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.