Evidence map›Paper›PMID 11238955›Full record

ArticleMolecular and cellular biology2001

Functional phosphorylation sites in the C-terminal region of the multivalent multifunctional transcriptional factor CTCF.

E M Klenova, I V Chernukhin, A El-Kady, R E Lee, E M Pugacheva, D I Loukinov, G H Goodwin, D Delgado, G N Filippova, J León and 3 more

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 103 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Function and Evolution of the Loop Extrusion Machinery in Animals.International journal of molecular sciences · 2023
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Developing in 3D: the role of CTCF in cell differentiation.Development (Cambridge, England) · 2018
    Review
  13. Article
  14. Article
  15. Article
  16. CTCF: making the right connections.Genes & development · 2016
    Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 4 countries.

E M KlenovaGenetics Laboratory, Department of Biochemistry, University of Oxford, Oxford OX1 3QU, United Kingdom.
I V Chernukhin
A El-Kady
R E Lee
E M Pugacheva
D I Loukinov
G H Goodwin
D Delgado
G N Filippova
J León
H C Morse
P E Neiman
V V Lobanenkov
University of Oxford · GBCape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa · ZANational Institute of Allergy and Infectious Diseases · USNational Institutes of Health · USUniversidad de Cantabria · ESInstitute of Cancer Research · GB

Funding

STRUCTURE AND FUNCTION OF CTCF--TRANSGENIC MICE STUDIESR01CA068360 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI FILIPPOVA, GALINA N · 1996 to 2007
$3.2M
MOLECULAR MECHANISMS IN NEOPLASIAR01CA020068 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI NEIMAN, PAUL ERIC · 1985 to 2008
$2.6M
Transcriptional Regulation Of Ctcf And Boris ExpressionZ01AI000860 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI LOBANENKOV, VICTOR · 2000 to 2008
$1.5M
MUTATIONS OF CTCF GENE AT CANCER ASSOCIATED LOCUS 16Q22R01CA071732 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI FILIPPOVA, GALINA N · 1996 to 1998
–
NCI NIH HHS R01 CA020068NCI NIH HHS R01 CA068360NCI NIH HHS R01 CA20068NCI NIH HHS R01 CA68360NCI NIH HHS R01 CA71732
6 · The paper itself

Abstract

CTCF is a widely expressed and highly conserved multi-Zn-finger (ZF) nuclear factor. Binding to various CTCF target sites (CTSs) is mediated by combinatorial contributions of different ZFs. Different CTSs mediate distinct CTCF functions in transcriptional regulation, including promoter repression or activation and hormone-responsive gene silencing. In addition, the necessary and sufficient core sequences of diverse enhancer-blocking (insulator) elements, including CpG methylation-sensitive ones, have recently been pinpointed to CTSs. To determine whether a posttranslational modification may modulate CTCF functions, we studied CTCF phosphorylation. We demonstrated that most of the modifications that occur at the carboxy terminus in vivo can be reproduced in vitro with casein kinase II (CKII). Major modification sites map to four serines within the S(604)KKEDS(609)S(610)DS(612)E motif that is highly conserved in vertebrates. Specific mutations of these serines abrogate phosphorylation of CTCF in vivo and CKII-induced phosphorylation in vitro. In addition, we showed that completely preventing phosphorylation by substituting all serines within this site resulted in markedly enhanced repression of the CTS-bearing vertebrate c-myc promoters, but did not alter CTCF nuclear localization or in vitro DNA-binding characteristics assayed with c-myc CTSs. Moreover, these substitutions manifested a profound effect on negative cell growth regulation by wild-type CTCF. CKII may thus be responsible for attenuation of CTCF activity, either acting on its own or by providing the signal for phosphorylation by other kinases and for CTCF-interacting protein partners.

Indexed as

Repressor ProteinsAmino Acid SequenceAmino Acid SubstitutionAnimalsBinding SitesCasein Kinase IICCCTC-Binding FactorCell DivisionCell LineChickensDNA-Binding ProteinsGenes, mycHumansMolecular Sequence DataMutationPhosphorylationCasein Kinase IICCCTC-Binding FactorCTCF protein, humanDNA-Binding ProteinsProtein Serine-Threonine KinasesRepressor ProteinsTranscription Factors

Identifiers

PMID11238955
PMCPMC86856
OpenAlexW2099104943

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.