Evidence map›Paper›PMID 11238941›Full record

ArticleMolecular and cellular biology2001

Identification of the Sin3-binding site in Ume6 defines a two-step process for conversion of Ume6 from a transcriptional repressor to an activator in yeast.

B K Washburn, R E Esposito

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 95 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

B K WashburnDepartment of Molecular Genetics and Cell Biology, University of Chicago, Chicago, Illinois 60637, USA.
R E Esposito
University of Chicago · US

Funding

Regulation of Meiotic DevelopmentR01GM029182 · NIGMS · UNIVERSITY OF CHICAGO · PI ESPOSITO, ROCHELLE E · 1985 to 2005
$1.6M
REGULATORS OF MEIOSIS-SPECIFIC GENE EXPRESSIONF32GM015400 · NIGMS · UNIVERSITY OF CHICAGO · PI WASHBURN, BRIAN K · 1992 to 1994
–
NIGMS NIH HHS F32GM15400NIGMS NIH HHS GM29182NIGMS NIH HHS R01 GM029182
6 · The paper itself

Abstract

The DNA-binding protein Ume6 is required for both repression and activation of meiosis-specific genes, through interaction with the Sin3 corepressor and Rpd3 histone deacetylase and the meiotic activator Ime1. Here we show that fusion of a heterologous activation domain to Ume6 is unable to convert it into a constitutive activator of early meiotic gene transcription, indicating that an additional function is needed to overcome repression at these promoters. Mutations in UME6 allowing the fusion to activate lie in a predicted amphipathic alpha helix and specifically disrupt interaction with Sin3 but not with Teal, an activator of Ty transcription also found to interact with Ume6 in a two-hybrid screen. The mutations cause a loss of repression by Ume6 and precisely identify the Ume6 Sin3-binding domain, which we show interacts with the paired amphipathic helix 2 region of Sin3. Analysis of these mutants indicates that conversion of Ume6 to an activator involves two genetically distinct steps that act to relieve Sin3-mediated repression and provide an activation domain to Ume6. The mutants further demonstrate that premature expression and lack of subsequent rerepression of Ume6-Sin3-regulated genes are not deleterious to meiotic progression and suggest that the essential role of Sin3 in meiosis is independent of Ume6. The model for Ume6 function arising from these studies indicates that Ume6 is similar in many respects to metazoan regulators that utilize Sin3, such as the Myc-Mad-Max system and nuclear hormone receptors, and provides new insights into the control of transcriptional repression and activation by the Ume6-URS1 regulatory complex in yeast.

Indexed as

Saccharomyces cerevisiae ProteinsTranscription, GeneticAmino Acid SequenceBinding SitesDNA-Binding ProteinsFungal ProteinsGene Expression Regulation, FungalHistone DeacetylasesMeiosisMolecular Sequence DataMutationNuclear ProteinsRepressor ProteinsSpores, FungalTrans-ActivatorsTranscription FactorsDNA-Binding ProteinsFungal ProteinsHistone DeacetylasesIME1 protein, S cerevisiaeNuclear ProteinsRepressor ProteinsSaccharomyces cerevisiae ProteinsSIN3 protein, S cerevisiaeSPO13 protein, S cerevisiaeTrans-ActivatorsTranscription FactorsUME6 protein, S cerevisiae

Identifiers

PMID11238941
PMCPMC86811
OpenAlexW2171619830

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.