Evidence map›Paper›PMID 11238879›Full record

ArticleJournal of virology2001

Repair of a Rev-minus human immunodeficiency virus type 1 mutant by activation of a cryptic splice site.

K Verhoef, P S Bilodeau, J L van Wamel, J Kjems, C M Stoltzfus, B Berkhout

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact, top 91% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. CRISPR-Cas12b enables a highly efficient attack on HIV proviral DNA in T cell cultures.Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie · 2023
    Article
  2. Unusual Fusion Proteins of HIV-1.Frontiers in microbiology · 2016
    Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

K VerhoefDepartment of Human Retrovirology, Academic Medical Center, University of Amsterdam, 1105 AZ Amsterdam, The Netherlands.
P S Bilodeau
J L van Wamel
J Kjems
C M Stoltzfus
B Berkhout
University of Amsterdam · NLUniversity of Iowa · USAarhus University · DK

Funding

REGULATION OF HIV-1 RNA SPLICINGR01AI036073 · NIAID · UNIVERSITY OF IOWA · PI AMENDT, BRAD · 1995 to 2010
$2.5M
Regulation of HIV-1 RNA SplicingR56AI036073 · NIAID · UNIVERSITY OF IOWA · PI STOLTZFUS, CONRAD · 2005 to 2005
$332k
NIAID NIH HHS AI36073NIAID NIH HHS R01 AI036073NIAID NIH HHS R56 AI036073
6 · The paper itself

Abstract

We isolated a revertant virus after prolonged culturing of a replication-impaired human immunodeficiency virus type 1 (HIV-1) mutant of which the Rev open reading frame was inactivated by mutation of the AUG translation initiation codon. Sequencing of the tat-rev region of this revertant virus identified a second-site mutation in tat that restored virus replication in the mutant background. This mutation activated a cryptic 5' splice site (ss) that, when used in conjunction with the regular HIV 3' ss #5, fuses the tat and rev reading frames to encode a novel T-Rev fusion protein that rescues Rev function. We also demonstrate an alternative route to indirectly activate this cryptic 5' ss by mutational inactivation of an adjacent exon splicing silencer element.

Indexed as

Genes, tatMutationVirus ReplicationAnimalsCodonCOS CellsGene Products, revHIV-1rev Gene Products, Human Immunodeficiency VirusCodonGene Products, revrev Gene Products, Human Immunodeficiency Virus

Identifiers

PMID11238879
PMCPMC114146
OpenAlexW2143199276

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.