ArticleGenetics2001
Arabidopsis and Brassica comparative genomics: sequence, structure and gene content in the ABI-Rps2-Ck1 chromosomal segment and related regions.
Article in Genetics, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.
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Who cites it
35 citing papers in PubMed, 88 citations in OpenAlex.
- Involvement of genes encoding ABI1 protein phosphatases in the response of Brassica napus L. to drought stress.Plant molecular biology · 2015Article
- Article
- Identification of suitable qPCR reference genes in leaves of Brassica oleracea under abiotic stresses.Ecotoxicology (London, England) · 2014Article
- Microstructure of a Brassica rapa genome segment homoeologous to the resistance gene cluster on Arabidopsis chromosome 4.Breeding science · 2012Article
- Comparative mapping, genomic structure, and expression analysis of eight pseudo-response regulator genes in Brassica rapa.Molecular genetics and genomics : MGG · 2012Article
- Mapping of BnMs4 and BnRf to a common microsyntenic region of Arabidopsis thaliana chromosome 3 using intron polymorphism markers.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012Review
- Sequenced BAC anchored reference genetic map that reconciles the ten individual chromosomes of Brassica rapa.BMC genomics · 2009Article
- Molecular and phenotypic characterization of near isogenic lines at QTL for quantitative resistance to Leptosphaeria maculans in oilseed rape (Brassica napus L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2008Article
- High throughput genome-specific and gene-specific molecular markers for erucic acid genes in Brassica napus (L.) for marker-assisted selection in plant breeding.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2008Article
- Cloning and characterization of phosphorus starvation inducible Brassica napus PURPLE ACID PHOSPHATASE 12 gene family, and imprinting of a recently evolved MITE-minisatellite twin structure.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2008Article
- Sequencing and comparative analysis of a conserved syntenic segment in the Solanaceae.Genetics · 2008Article
- Article
- Progress in understanding and sequencing the genome of Brassica rapa.International journal of plant genomics · 2008Article
- Article
- Does sequence polymorphism of FLC paralogues underlie flowering time QTL in Brassica oleracea?TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2008Article
- Article
- Sequence-level analysis of the diploidization process in the triplicated FLOWERING LOCUS C region of Brassica rapa.The Plant cell · 2006Article
- Comparative analysis of methylthioalkylmalate synthase (MAM) gene family and flanking DNA sequences in Brassica oleracea and Arabidopsis thaliana.Plant cell reports · 2006Article
- Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy.The Plant cell · 2006Article
- Independent ancient polyploidy events in the sister families Brassicaceae and Cleomaceae.The Plant cell · 2006Article
Corrections and comments
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Authors and funding
6 authors at 4 institutions in 4 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The region corresponding to the ABI1-Rps2-Ck1 segment on chromosome 4 of Arabidopsis thaliana was sequenced in Brassica oleracea. Similar to A. thaliana, the B. oleracea homolog BoRps2 is present in single copy. The B. oleracea orthologous segment was located on chromosome 4 and can be distinguished by the presence of an N-myristoyl transferase coding gene (N-myr) between the Rps2 and Ck1 (BoCk1a) genes. The N-myr homologs in Arabidopsis are on chromosomes 2 and 5. Additional homologs for Ck1 are located on these two chromosomes. A second Ck1 homolog found on B. oleracea (BoCk1b) chromosome 7 served to define another orthologous segment located in Arabidopsis chromosome 1. The two segments displayed identical gene content and order in both species, namely BoCK1b, a gene encoding a hypothetical protein (BohypothA) and transcription factor eiF4A. High levels of sequence identity were observed for the coding sequences of all genes examined. Although in general larger spacers were found in Brassica than in A. thaliana, this was not always the case. Promoters were poorly conserved, except for several sequence stretches of a few nucleotides. Comparative sequencing revealed microsyntenic changes resulting from chromosomal structural rearrangements, which are often undetectable by genetic mapping.
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