Evidence map›Paper›PMID 11238405›Full record

ArticleGenetics2001

Transcriptional regulators of the Schizosaccharomyces pombe fbp1 gene include two redundant Tup1p-like corepressors and the CCAAT binding factor activation complex.

R T Janoo, L A Neely, B R Braun, S K Whitehall, C S Hoffman

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 65 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

R T JanooBiology Department, Boston College, Chestnut Hill, Massachusetts 02467, USA.
L A Neely
B R Braun
S K Whitehall
C S Hoffman
Boston College · USNewcastle University · GBUniversity of California, San Francisco · US

Funding

TRANSCRIPTIONAL REGULATION OF THE S POMBE FBPL GENER01GM046226 · NIGMS · BOSTON COLLEGE · PI HOFFMAN, CHARLES S. · 1996 to 2005
$1.3M
S POMBE CAMP SIGNAL PATHWAYR29GM046226 · NIGMS · BOSTON COLLEGE · PI HOFFMAN, CHARLES S. · 1991 to 1995
–
NIGMS NIH HHS GM46226NIGMS NIH HHS R01 GM046226
6 · The paper itself

Abstract

The Schizosaccharomyces pombe fbp1 gene, which encodes fructose-1,6-bis-phosphatase, is transcriptionally repressed by glucose through the activation of the cAMP-dependent protein kinase A (PKA) and transcriptionally activated by glucose starvation through the activation of a mitogen-activated protein kinase (MAPK). To identify transcriptional regulators acting downstream from or in parallel to PKA, we screened an adh-driven cDNA plasmid library for genes that increase fbp1 transcription in a strain with elevated PKA activity. Two such clones express amino-terminally truncated forms of the S. pombe tup12 protein that resembles the Saccharomyces cerevisiae Tup1p global corepressor. These clones appear to act as dominant negative alleles. Deletion of both tup12 and the closely related tup11 gene causes a 100-fold increase in fbp1-lacZ expression, indicating that tup11 and tup12 are redundant negative regulators of fbp1 transcription. In strains lacking tup11 and tup12, the atf1-pcr1 transcriptional activator continues to play a central role in fbp1-lacZ expression; however, spc1 MAPK phosphorylation of atf1 is no longer essential for its activation. We discuss possible models for the role of tup11- and tup12-mediated repression with respect to signaling from the MAPK and PKA pathways. A third clone identified in our screen expresses the php5 protein subunit of the CCAAT-binding factor (CBF). Deletion of php5 reduces fbp1 expression under both repressed and derepressed conditions. The CBF appears to act in parallel to atf1-pcr1, although it is unclear whether or not CBF activity is regulated by PKA.

Indexed as

Gene Expression Regulation, FungalNuclear ProteinsRepressor ProteinsSaccharomyces cerevisiae ProteinsTranscription, GeneticAmino Acid Sequencebeta-GalactosidaseCCAAT-Binding FactorCloning, MolecularCyclic AMP-Dependent Protein KinasesDNA, ComplementaryFructose-BisphosphataseFungal ProteinsGene DeletionGene LibraryGenotypebeta-GalactosidaseCCAAT-Binding FactorCyclic AMP-Dependent Protein KinasesDNA, ComplementaryFructose-BisphosphataseFungal ProteinsNuclear ProteinsRepressor ProteinsSaccharomyces cerevisiae ProteinsTUP1 protein, S cerevisiae

Identifiers

PMID11238405
PMCPMC1461578
OpenAlexW2148680993

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.