Evidence map›Paper›PMID 11238384›Full record

ArticleGenetics2001

Identification of virulence mutants of the fungal pathogen Cryptococcus neoformans using signature-tagged mutagenesis.

R T Nelson, J Hua, B Pryor, J K Lodge

Registry-linked trialAbstract read
In one paragraph

Article in Genetics, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03112031 (A Randomized Trial of Tamoxifen Combined With Amphotericin B and Fluconazole for Cryptococcal Meningitis), which is not on this map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03112031 phase2completednot on this mapstarted 2017, after this paper: background citation

A Randomized Trial of Tamoxifen Combined With Amphotericin B and Fluconazole for Cryptococcal Meningitis

TypeinterventionalSponsorOxford University Clinical Research Unit, VietnamRan2017 to 2018Enrolled50ConditionsMeningitis Streptococcal, Hiv, Meningitis, MeningoencephalitisArmsTamoxifen, Amphotericin B, Fluconazole
3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 87 citations in OpenAlex.

  1. Article
  2. Clinical features and cause analysis of false positive results of Aspergillus galactomannan assay in pulmonary cryptococcosis patients.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2019
    Article
  3. Article
  4. Article
  5. Article
  6. New technology and resources for cryptococcal research.Fungal genetics and biology : FG & B · 2015
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. RNA interference in Cryptococcus neoformans.Methods in molecular biology (Clifton, N.J.) · 2012
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

R T NelsonEdward A. Doisy Department of Biochemistry and Molecular Biology, Saint Louis University School of Medicine, St. Louis, Missouri 63104, USA.
J Hua
B Pryor
J K Lodge
Saint Louis University · US

Funding

AN AIDS-RELATED CRYPTOCOCCUS NEOFORMANS GENOME CENTERU01AI047087 · NIAID · STANFORD UNIVERSITY · PI DAVIS, RONALD WAYNE · 2000 to 2002
$2.6M
GENETIC SCREEN FOR VIRULENCE GENES IN C NEOFORMANSK02AI001577 · NIAID · SAINT LOUIS UNIVERSITY · PI LODGE, JENNIFER K. · 1999 to 2003
$383k
IDENTIFICATION--CRYPTOCOCCUS NEOFORMANS VIRULENCE GENESR29AI041962 · NIAID · WASHINGTON UNIVERSITY · PI LODGE, JENNIFER K. · 1997 to 2001
$216k
NIAID NIH HHS K02-AI01577NIAID NIH HHS R29-AI41962NIAID NIH HHS U01 AI47087
6 · The paper itself

Abstract

Cryptococcus neoformans var. neoformans is an important opportunistic fungal pathogen of patients whose immune system has been compromised due to viral infection, antineoplastic chemotherapy, or tissue transplantation. As many as 13% of all AIDS patients suffer a life-threatening cryptococcal infection at some time during the course of their HIV disease. To begin to understand the molecular basis for virulence in Cryptococcus neoformans var. neoformans serotype A, we have employed signature-tagged mutagenesis (STM) to identify mutants with altered virulence in a mouse model. The critical parameters of signature-tagged mutagenesis in C. neoformans are explored. Data are presented showing that at least 100 different strains can be mixed together in a single animal with each participating in the infection and that there is no apparent interaction between a virulent strain and an avirulent strain in our animal model. Using signature-tagged mutagenesis, we identified 39 mutants with significantly altered growth in a competitive assay. Molecular analyses of these mutants indicated that 19 (49%) contained an insertion in the actin promoter by homologous recombination from a single crossover event, creating a duplication of the actin promoter and the integration of single or multiple copies of the vector. Analysis of the chromosomal insertion sites of those mutants that did not have an integration event in the actin promoter revealed an approximately random distribution among the chromosomes. Individual challenge of the putative mutants in a mouse model revealed five hypovirulent mutants and one hypervirulent mutant.

Indexed as

MutagenesisActinsAnimalsBlotting, NorthernBlotting, SouthernBlotting, WesternChromosome MappingCrossing Over, GeneticCryptococcus neoformansFemaleGenetic VectorsMiceMice, Inbred BALB CModels, GeneticMutationPlasmidsActins

Identifiers

PMID11238384
PMCPMC1461580
OpenAlexW2171349847

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.