Evidence map›Paper›PMID 11237021›Full record

ArticleNature2001

Integration of cytogenetic landmarks into the draft sequence of the human genome.

V G Cheung, N Nowak, W Jang, I R Kirsch, S Zhao, X N Chen, T S Furey, U J Kim, W L Kuo, M Olivier and 51 more

Open access · hybridAbstract read
In one paragraph

Article in Nature, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 114 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
114citing papers in PubMed, 1 pooled it
58.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

114 citing papers in PubMed, 1 synthesis or guideline pooled it, 324 citations in OpenAlex.

  1. Pooled it
  2. Article
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  4. Abundant Parent-of-origin Effect eQTL: The Framingham Heart Study.bioRxiv : the preprint server for biology · 2025
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  8. A Novel Approach to Quantify Heterogeneity of Intrahepatic Cholangiocarcinoma: The Hidden-Genome Classifier.Clinical cancer research : an official journal of the American Association for Cancer Research · 2024
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  15. Article
  16. Article
  17. Genome-Derived Classification Signature for Ampullary Adenocarcinoma to Improve Clinical Cancer Care.Clinical cancer research : an official journal of the American Association for Cancer Research · 2021
    Article
  18. Anchoring the CerEla1.0 Genome Assembly to Red Deer (Animals : an open access journal from MDPI · 2021
    Article
  19. Article
  20. Cellular and genomic approaches for exploring structural chromosomal rearrangements.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2020
    Review

54 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

61 authors at 16 institutions in 3 countries.

V G CheungDepartment of Pediatrics, University of Pennsylvania, The Children's Hospital of Philadelphia, 19104, USA.
N Nowak
W Jang
I R Kirsch
S Zhao
X N Chen
T S Furey
U J Kim
W L Kuo
M Olivier
J Conroy
A Kasprzyk
H Massa
R Yonescu
S Sait
C Thoreen
A Snijders
E Lemyre
J A Bailey
A Bruzel
W D Burrill
S M Clegg
S Collins
P Dhami
C Friedman
C S Han
S Herrick
J Lee
A H Ligon
S Lowry
M Morley
S Narasimhan
K Osoegawa
Z Peng
I Plajzer-Frick
B J Quade
D Scott
K Sirotkin
A A Thorpe
J W Gray
J Hudson
D Pinkel
T Ried
L Rowen
G L Shen-Ong
R L Strausberg
E Birney
D F Callen
J F Cheng
D R Cox
N A Doggett
N P Carter
E E Eichler
D Haussler
J R Korenberg
C C Morton
D Albertson
G Schuler
P J de Jong
B J Trask
BAC Resource Consortium
Roswell Park Comprehensive Cancer Center · USBrigham and Women's Hospital · USUniversity of California, San Francisco · USWellcome Sanger Institute · GBChildren's Hospital of Philadelphia · USLawrence Berkeley National Laboratory · USCalifornia Institute of Technology · USCedars-Sinai Medical Center · USLos Alamos National Laboratory · USFred Hutch Cancer Center · USNational Cancer Institute · USTheodore Roosevelt High School · USUniversity of Washington · USHoward Hughes Medical Institute · USNational Center for Biotechnology Information · USWomen's and Children's Hospital · AU

Funding

RAPID GENE DISCOVERYP01GM061354 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI MORTON, CYNTHIA CASSON · 2001 to 2019
$24.3M
NIGMS NIH HHS P01 GM061354
6 · The paper itself

Abstract

We have placed 7,600 cytogenetically defined landmarks on the draft sequence of the human genome to help with the characterization of genes altered by gross chromosomal aberrations that cause human disease. The landmarks are large-insert clones mapped to chromosome bands by fluorescence in situ hybridization. Each clone contains a sequence tag that is positioned on the genomic sequence. This genome-wide set of sequence-anchored clones allows structural and functional analyses of the genome. This resource represents the first comprehensive integration of cytogenetic, radiation hybrid, linkage and sequence maps of the human genome; provides an independent validation of the sequence map and framework for contig order and orientation; surveys the genome for large-scale duplications, which are likely to require special attention during sequence assembly; and allows a stringent assessment of sequence differences between the dark and light bands of chromosomes. It also provides insight into large-scale chromatin structure and the evolution of chromosomes and gene families and will accelerate our understanding of the molecular bases of human disease and cancer.

Indexed as

Chromosome AberrationsGenetic MarkersGenome, HumanChromosome MappingChromosomes, Artificial, BacterialCytogenetic AnalysisHuman Genome ProjectHumansIn Situ Hybridization, FluorescenceRadiation Hybrid MappingSequence Tagged SitesGenetic Markers

Identifiers

PMID11237021
PMCPMC7845515
OpenAlexW1978283952

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.