Evidence map›Paper›PMID 11230172›Full record

ArticleGenome research2001

A bacterial artificial chromosome library for sequencing the complete human genome.

K Osoegawa, A G Mammoser, C Wu, E Frengen, C Zeng, J J Catanese, P J de Jong

Abstract read
In one paragraph

Article in Genome research, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 116 papers.

0numbers the graph read from it
0cells of the map it votes in
116citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

116 citing papers in PubMed.

  1. Article
  2. Review
  3. Co-infection of HSV-1 amplicons containing theBiochemistry and biophysics reports · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Genomic medicine on the frontier of precision medicine.Journal of diabetes and metabolic disorders · 2022
    Review
  9. Progress in Methods for Copy Number Variation Profiling.International journal of molecular sciences · 2022
    Review
  10. Progress, Challenges, and Surprises in Annotating the Human Genome.Annual review of genomics and human genetics · 2020
    Review
  11. Cellular and genomic approaches for exploring structural chromosomal rearrangements.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2020
    Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Beyond editing to writing large genomes.Nature reviews. Genetics · 2017
    Article
  18. Article
  19. Article
  20. Article

56 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

K OsoegawaDepartment of Cancer Genetics, Roswell Park Cancer Institute, Buffalo, New York 14263, USA.
A G Mammoser
C Wu
E Frengen
C Zeng
J J Catanese
P J de Jong

Funding

LARGE INSERT PAC LIBRARY FOR THE RAT GENOMER01HL055700 · NHLBI · ROSWELL PARK CANCER INSTITUTE · PI DE JONG, PIETER J. · 1995 to 1996
–
CSR NIH HHS 1RO1RG01165NHLBI NIH HHS 1RO1HL55700
6 · The paper itself

Abstract

A 30-fold redundant human bacterial artificial chromosome (BAC) library with a large average insert size (178 kb) has been constructed to provide the intermediate substrate for the international genome sequencing effort. The DNA was obtained from a single anonymous volunteer, whose identity was protected through a double-blind donor selection protocol. DNA fragments were generated by partial digestion with EcoRI (library segments 1--4: 24-fold) and MboI (segment 5: sixfold) and cloned into the pBACe3.6 and pTARBAC1 vectors, respectively. The quality of the library was assessed by extensive analysis of 169 clones for rearrangements and artifacts. Eighteen BACs (11%) revealed minor insert rearrangements, and none was chimeric. This BAC library, designated as "RPCI-11," has been used widely as the central resource for insert-end sequencing, clone fingerprinting, high-throughput sequence analysis and as a source of mapped clones for diagnostic and functional studies.

Indexed as

Genomic LibraryChromosomes, Artificial, BacterialCloning, MolecularContig MappingDeoxyribonuclease EcoRIDeoxyribonucleases, Type II Site-SpecificDNA, SatelliteGene RearrangementGenetic MarkersHuman Genome ProjectHumansMolecular Sequence DataRecombinant Fusion ProteinsRecombination, GeneticRestriction MappingSequence Analysis, DNADeoxyribonuclease EcoRIDeoxyribonucleases, Type II Site-SpecificDNA, SatelliteGATC-specific type II deoxyribonucleasesGenetic MarkersRecombinant Fusion Proteins

Identifiers

PMID11230172
PMCPMC311044

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.