Evidence map›Paper›PMID 11217851›Full record

ArticleNature2001

Functional annotation of a full-length mouse cDNA collection.

J Kawai, A Shinagawa, K Shibata, M Yoshino, M Itoh, Y Ishii, T Arakawa, A Hara, Y Fukunishi, H Konno and 87 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 263 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
263citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

263 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Mitochondrial CaCommunications biology · 2026
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  11. Regulation ofWorld journal of clinical oncology · 2024
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  12. Generation and analysis of a mouse multi-tissue genome annotation atlas.bioRxiv : the preprint server for biology · 2024
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  13. Generation of tamoxifen-inducible Tfap2b-CreERGenesis (New York, N.Y. : 2000) · 2024
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  14. Article
  15. Review
  16. Review
  17. Article
  18. Review
  19. Comprehensive analysis of 124 transcriptomes from 31 tissues in developing, juvenile, and adult Japanese Black cattle.DNA research : an international journal for rapid publication of reports on genes and genomes · 2022
    Article
  20. Article

203 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

97 authors.

J KawaiLaboratory for Genome Exploration Research Group, RIKEN Genomic Sciences Center, Yokohama Institute, Kanagawa, Japan.
A Shinagawa
K Shibata
M Yoshino
M Itoh
Y Ishii
T Arakawa
A Hara
Y Fukunishi
H Konno
J Adachi
S Fukuda
K Aizawa
M Izawa
K Nishi
H Kiyosawa
S Kondo
I Yamanaka
T Saito
Y Okazaki
T Gojobori
H Bono
T Kasukawa
R Saito
K Kadota
H Matsuda
M Ashburner
S Batalov
T Casavant
W Fleischmann
T Gaasterland
C Gissi
B King
H Kochiwa
P Kuehl
S Lewis
Y Matsuo
I Nikaido
G Pesole
J Quackenbush
L M Schriml
F Staubli
R Suzuki
M Tomita
L Wagner
T Washio
K Sakai
T Okido
M Furuno
H Aono
R Baldarelli
G Barsh
J Blake
D Boffelli
N Bojunga
P Carninci
M F de Bonaldo
M J Brownstein
C Bult
C Fletcher
M Fujita
M Gariboldi
S Gustincich
D Hill
M Hofmann
D A Hume
M Kamiya
N H Lee
P Lyons
L Marchionni
J Mashima
J Mazzarelli
P Mombaerts
P Nordone
B Ring
M Ringwald
I Rodriguez
N Sakamoto
H Sasaki
K Sato
C Schönbach
T Seya
Y Shibata
K F Storch
H Suzuki
K Toyo-oka
K H Wang
C Weitz
C Whittaker
L Wilming
A Wynshaw-Boris
K Yoshida
Y Hasegawa
H Kawaji
S Kohtsuki
Y Hayashizaki
RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium

Funding

GENETICS OF COMPLEX TRAITS IN HUMANS AND RODENTSZ01MH002771 · NIMH · NATIONAL INSTITUTE OF MENTAL HEALTH · PI BROWNSTEIN, MICHAEL · 1998 to 2004
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6 · The paper itself

Abstract

The RIKEN Mouse Gene Encyclopaedia Project, a systematic approach to determining the full coding potential of the mouse genome, involves collection and sequencing of full-length complementary DNAs and physical mapping of the corresponding genes to the mouse genome. We organized an international functional annotation meeting (FANTOM) to annotate the first 21,076 cDNAs to be analysed in this project. Here we describe the first RIKEN clone collection, which is one of the largest described for any organism. Analysis of these cDNAs extends known gene families and identifies new ones.

Indexed as

Computational BiologyDNA, ComplementaryAnimalsChromosome MappingEnzymesGene LibraryGenomeHumansMiceMice, Inbred C57BLProtein BiosynthesisProtein Structure, TertiaryRNA, MessengerSequence Analysis, DNADNA, ComplementaryEnzymesRNA, Messenger

Identifiers

PMID11217851

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.