Evidence map›Paper›PMID 11208785›Full record

ArticleJournal of bacteriology2001

Ammonia switch-off of nitrogen fixation in the methanogenic archaeon Methanococcus maripaludis: mechanistic features and requirement for the novel GlnB homologues, NifI(1) and NifI(2).

P S Kessler, C Daniel, J A Leigh

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 89 citations in OpenAlex.

  1. Article
  2. Review
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  5. Article
  6. Review
  7. Article
  8. Expression of V-nitrogenase and Fe-nitrogenase inApplied and environmental microbiology · 2023
    Article
  9. Article
  10. Article
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  12. Article
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  14. Article
  15. Article
  16. Denitrification Aligns with NScientific reports · 2019
    Article
  17. Review
  18. Photosynthetic Versatility in the Genome ofFrontiers in microbiology · 2016
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

P S KesslerDepartment of Microbiology, University of Washington, Seattle, Washington 98195, USA.
C Daniel
J A Leigh
University of Washington · US

Funding

Transcriptional Nitrogen Regulation in MethanococcusR01GM055255 · NIGMS · UNIVERSITY OF WASHINGTON · PI LEIGH, JOHN A · 1998 to 2007
$1.4M
NIGMS NIH HHS GM-55255NIGMS NIH HHS R01 GM055255
6 · The paper itself

Abstract

Ammonia switch-off is the immediate inactivation of nitrogen fixation that occurs when a superior nitrogen source is encountered. In certain bacteria switch-off occurs by reversible covalent ADP-ribosylation of the dinitrogenase reductase protein, NifH. Ammonia switch-off occurs in diazotrophic species of the methanogenic Archaea as well. We showed previously that in Methanococcus maripaludis switch-off requires at least one of two novel homologues of glnB, a family of genes whose products play a central role in nitrogen sensing and regulation in bacteria. The novel glnB homologues have recently been named nifI(1) and nifI(2). Here we use in-frame deletions and genetic complementation analysis in M. maripaludis to show that the nifI(1) and nifI(2) genes are both required for switch-off. We could not detect ADP-ribosylation or any other covalent modification of dinitrogenase reductase during switch-off, suggesting that the mechanism differs from the well-studied bacterial system. Furthermore, switch-off did not affect nif gene transcription, nifH mRNA stability, or NifH protein stability. Nitrogenase activity resumed within a short time after ammonia was removed from a switched-off culture, suggesting that whatever the mechanism, it is reversible. We demonstrate the physiological importance of switch-off by showing that it allows growth to accelerate substantially when a diazotrophic culture is switched to ammonia.

Indexed as

Genes, SwitchAmmoniaArchaeal ProteinsGenes, BacterialMethanococcusNitrogen FixationOxidoreductasesPII Nitrogen Regulatory ProteinsAmmoniaArchaeal ProteinsNifI1 protein, Methanococcus maripaludisNifI2 protein, Methanococcus maripaludisnitrogenase reductaseOxidoreductasesPII Nitrogen Regulatory Proteins

Identifiers

PMID11208785
PMCPMC94954
OpenAlexW2006080745

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.