Evidence map›Paper›PMID 11179285›Full record

ArticleInfection and immunity2001

Molecular characterization of Streptococcus pneumoniae type 4, 6B, 8, and 18C capsular polysaccharide gene clusters.

S M Jiang, L Wang, P R Reeves

Abstract read
In one paragraph

Article in Infection and immunity, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
12.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 116 citations in OpenAlex.

  1. Article
  2. Investigation of the essential role of capsular polysaccharide in serotype 1Frontiers in cellular and infection microbiology · 2026
    Article
  3. Article
  4. Article
  5. The Molecular Approaches and Challenges ofPolish journal of microbiology · 2023
    Review
  6. Article
  7. Microbiology spectrum · 2019
    Review
  8. Review
  9. Review
  10. Article
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  12. Review
  13. Article
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  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

S M JiangDepartment of Microbiology, The University of Sydney, Sydney, New South Wales 2006, Australia.
L Wang
P R Reeves
University of Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Capsular polysaccharide (CPS) is a major virulence factor in Streptococcus pneumoniae. CPS gene clusters of S. pneumoniae types 4, 6B, 8, and 18C were sequenced and compared with those of CPS types 1, 2, 14, 19F, 19A, 23F, and 33F. All have the same four genes at the 5' end, encoding proteins thought to be involved in regulation and export. Sequences of these genes can be divided into two classes, and evidence of recombination between them was observed. Next is the gene encoding the transferase for the first step in the synthesis of CPS. The predicted amino acid sequences of these first sugar transferases have multiple transmembrane segments, a feature lacking in other transferases. Sugar pathway genes are located at the 3' end of the gene cluster. Comparison of the four dTDP-L-rhamnose pathway genes (rml genes) of CPS types 1, 2, 6B, 18C, 19F, 19A, and 23F shows that they have the same gene order and are highly conserved. There is a gradient in the nature of the variation of rml genes, the average pairwise difference for those close to the central region being higher than that for those close to the end of the gene cluster and, again, recombination sites can be observed in these genes. This is similar to the situation we observed for rml genes of O-antigen gene clusters of Salmonella enterica. Our data indicate that the conserved first four genes at the 5' ends and the relatively conserved rml genes at the 3' ends of the CPS gene clusters were sites for recombination events involved in forming new forms of CPS. We have also identified wzx and wzy genes for all sequenced CPS gene clusters by use of motifs.

Indexed as

Genes, BacterialMultigene FamilyBacterial CapsulesBase SequenceCarbohydrate SequenceConserved SequenceCytidine Diphosphate DiglyceridesGenetic VariationGene Transfer, HorizontalGlycosyltransferasesIntramolecular TransferasesMolecular Sequence DataNucleoside Diphosphate SugarsRecombination, GeneticSequence Analysis, DNASequence Homology, Nucleic AcidCytidine Diphosphate DiglyceridesGlycosyltransferasesIntramolecular TransferasesNucleoside Diphosphate Sugarsthymidine diphosphate rhamnoseThymine NucleotidesUDP-galactopyranose mutaseUDP-N-acetylfucosamineUridine Diphosphate Glucuronic Aciduridine diphosphate N-acetylmannosamineUridine Diphosphate Sugars

Identifiers

PMID11179285
PMCPMC98014
OpenAlexW2171728746

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.