Evidence map›Paper›PMID 11172027›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2001

A shark antibody heavy chain encoded by a nonsomatically rearranged VDJ is preferentially expressed in early development and is convergent with mammalian IgG.

L L Rumfelt, D Avila, M Diaz, S Bartl, E C McKinney, M F Flajnik

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 101 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Exploration of the Nurse Shark (Frontiers in immunology · 2022
    Article
  9. Article
  10. Article
  11. The immunoglobulins of cartilaginous fishes.Developmental and comparative immunology · 2021
    Review
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Review
  18. A cold-blooded view of adaptive immunity.Nature reviews. Immunology · 2018
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

L L RumfeltDepartment of Microbiology and Immunology, University of Miami School of Medicine, P.O. Box 016960 (R-138), Miami, FL 33101, USA.
D Avila
M Diaz
S Bartl
E C McKinney
M F Flajnik
Scripps Research Institute · USMoss Landing Marine Laboratories · USUniversity of Miami · US

Funding

EVOLUTION OF THE MAJOR HISTOCOMPATIBILITY COMPLEXR01RR006603 · NCRR · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI FLAJNIK, MARTIN F · 1991 to 2011
$3.4M
NCRR NIH HHS R01 RR006603NCRR NIH HHS RR06603
6 · The paper itself

Abstract

In most vertebrate embryos and neonates studied to date unique antigen receptors (antibodies and T cell receptors) are expressed that possess a limited immune repertoire. We have isolated a subclass of IgM, IgM(1gj), from the nurse shark Ginglymostoma cirratum that is preferentially expressed in neonates. The variable (V) region gene encoding the heavy (H) chain underwent V-D-J rearrangement in germ cells ("germline-joined"). Such H chain V genes were discovered over 10 years ago in sharks but until now were not shown to be expressed at appreciable levels; we find expression of H(1gj) in primary and secondary lymphoid tissues early in life, but in adults only in primary lymphoid tissue, which is identified in this work as the epigonal organ. H(1gj) chain associates covalently with light (L) chains and is most similar in sequence to IgM H chains, but like mammalian IgG has three rather than the four IgM constant domains; deletion of the ancestral IgM C2 domain thus defines both IgG and IgM(1gj). Because sharks are the members of the oldest vertebrate class known to possess antibodies, unique or specialized antibodies expressed early in ontogeny in sharks and other vertebrates were likely present at the inception of the adaptive immune system.

Indexed as

Gene Rearrangement, B-Lymphocyte, Heavy ChainAmino Acid SequenceAnimalsAnimals, NewbornExonsGene DosageGene ExpressionGerm CellsImmunoglobulin GImmunoglobulin Heavy ChainsImmunoglobulin Joining RegionImmunoglobulin MImmunoglobulin Variable RegionMammalsMolecular Sequence DataMultigene FamilyImmunoglobulin GImmunoglobulin Heavy ChainsImmunoglobulin Joining RegionImmunoglobulin MImmunoglobulin Variable Region

Identifiers

PMID11172027
PMCPMC29333
OpenAlexW2023485491

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.