Evidence map›Paper›PMID 11161017›Full record

ArticlePlant physiology2001

Involvement of a nuclear-encoded basic helix-loop-helix protein in transcription of the light-responsive promoter of psbD.

K Baba, T Nakano, K Yamagishi, S Yoshida

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Plant physiology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 78 citations in OpenAlex.

  1. Article
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  4. Review
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  6. Identification, Gene Structure, and Expression ofFrontiers in plant science · 2020
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Comparative Analysis of ChloroplastFrontiers in plant science · 2017
    Article
  12. Article
  13. Review
  14. Article
  15. Arabidopsis thaliana AHL family modulates hypocotyl growth redundantly by interacting with each other via the PPC/DUF296 domain.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

K BabaRIKEN, The Institute of Physical and Chemical Research, Wako, Saitama 351-0198, Japan. kyoko.baba@genfys.slu.se
T Nakano
K Yamagishi
S Yoshida
RIKEN · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the chloroplast psbD light-responsive promoter (LRP), a highly conserved sequence exists upstream from the bacterial -10/-35 elements. Multiple sequence-specific DNA binding proteins are predicted to bind to the conserved sequence as transcription factors. Using yeast one-hybrid screening of an Arabidopsis cDNA library, a possible DNA binding protein of the psbD LRP upstream sequence was identified. The protein, designated PTF1, is a novel protein of 355 amino acids (estimated molecular weight of 39.6) that contains a basic helix-loop-helix DNA binding motif in the predicted N-terminal region of the mature protein. Transient expression assay of PTF1-GFP fusion protein showed that PTF1 was localized in chloroplasts. Using the modified DNA sequence in the one-hybrid system, the ACC repeat was shown to be essential for PTF1 binding. The rate of psbD LRP mRNA accumulation was reduced in a T-DNA-inserted Arabidopsis ptf1 mutant. Compared with wild-type plants, the mutant had pale green cotyledons and its growth was inhibited under short-day conditions. These results suggest that PTF1 is a trans-acting factor of the psbD LRP.

Indexed as

Amino Acid SequenceArabidopsisArabidopsis ProteinsBase SequenceCell NucleusCloning, MolecularDNA PrimersEscherichia coliHelix-Loop-Helix MotifsLightMolecular Sequence DataMutagenesisPhotosystem II Protein ComplexPolymerase Chain ReactionPromoter Regions, GeneticSaccharomyces cerevisiaeArabidopsis ProteinsDNA PrimersPhotosystem II Protein ComplexPsbD protein, Arabidopsis

Identifiers

PMID11161017
PMCPMC64861
OpenAlexW2007690902

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.