Evidence map›Paper›PMID 11160895›Full record

ArticleNucleic acids research2001

The Crithidia fasciculata RNH1 gene encodes both nuclear and mitochondrial isoforms of RNase H.

M L Engel, J C Hines, D S Ray

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. How RNases Shape Mitochondrial Transcriptomes.International journal of molecular sciences · 2022
    Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

M L EngelMolecular Biology Institute and Department of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, CA 90095-1570, USA.
J C Hines
D S Ray
University of California, Los Angeles · US

Funding

REGULATION OF TRYPANOSOME DNA REPLICATIONR01GM053254 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI RAY, DAN S · 1995 to 2013
$4.3M
HISTONE LIKE PROTEINS ASSOCIATED WITH KINETOPLAST DNAR01AI045536 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI RAY, DAN S · 1999 to 2002
$656k
Regulation of Trypanosome DNA ReplicationR56GM053254 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI RAY, DAN S · 2008 to 2009
$453k
NIAID NIH HHS AI45536NIGMS NIH HHS GM53254NIGMS NIH HHS R01 GM053254NIGMS NIH HHS R56 GM053254
6 · The paper itself

Abstract

The Crithidia fasciculata RNH1 gene encodes an RNase H, an enzyme that specifically degrades the RNA strand of RNA-DNA hybrids. The RNH1 gene is contained within an open reading frame (ORF) predicted to encode a protein of 53.7 kDa. Previous work has shown that RNH1 expresses two proteins: a 38 kDa protein and a 45 kDa protein which is enriched in kinetoplast extracts. Epitope tagging of the C-terminus of the RNH1 gene results in localization of the protein to both the kinetoplast and the nucleus. Translation of the ORF beginning at the second in-frame methionine codon predicts a protein of 38 kDa. Insertion of two tandem stop codons between the first ATG codon and the second in-frame ATG codon of the ORF results in expression of only the 38 kDa protein and the protein localizes specifically to the nucleus. Mutation of the second methionine codon to a valine codon prevents expression of the 38 kDa protein and results in exclusive production of the 45 kDa protein and localization of the protein only in the kinetoplast. These results suggest that the kinetoplast enzyme results from processing of the full-length 53.7 kDa protein. The nuclear enzyme appears to result from translation initiation at the second in-frame ATG codon. This is the first example in trypanosomatids of the production of nuclear and mitochondrial isoforms of a protein from a single gene and is the only eukaryotic gene in the RNase HI gene family shown to encode a mitochondrial RNase H.

Indexed as

Alternative SplicingAmino Acid SequenceAnimalsBase SequenceCell NucleusCodon, InitiatorCrithidia fasciculataDNA, RecombinantIsoenzymesMicroscopy, FluorescenceMitochondriaMolecular Sequence DataMutagenesis, InsertionalMutationPlasmidsReverse Transcriptase Polymerase Chain ReactionCodon, InitiatorDNA, RecombinantIsoenzymesRibonuclease HRNA, Messenger

Identifiers

PMID11160895
PMCPMC30385
OpenAlexW2124535642

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.