Evidence map›Paper›PMID 11159978›Full record

ArticleInfection and immunity2001

Combinatorial library cloning of human antibodies to Streptococcus pneumoniae capsular polysaccharides: variable region primary structures and evidence for somatic mutation of Fab fragments specific for capsular serotypes 6B, 14, and 23F.

A H Lucas, K D Moulton, V R Tang, D C Reason

Open access · greenAbstract read
In one paragraph

Article in Infection and immunity, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
3.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 56 citations in OpenAlex.

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  8. Review
  9. Ageing of the B-cell repertoire.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2015
    Article
  10. Restricted, canonical, stereotyped and convergent immunoglobulin responses.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2015
    Review
  11. Article
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  15. Phenotypic analysis of pneumococcal polysaccharide-specific B cells.Journal of immunology (Baltimore, Md. : 1950) · 2012
    Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

A H LucasChildren's Hospital Oakland Research Institute, Oakland, California 94609, USA. alucas@chori.org
K D Moulton
V R Tang
D C Reason

Funding

ZIDOVUDINE &LAMIVUDINE &NEVIRAPINE COMBINATION THERAPY IN HIV 1 INFM01RR001271 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KESSLER, DAVID A · 1985 to 2006
$22.7M
HUMAN ANTIBODY REPERTOIRE TO H INFLUENZAE BR37AI025008 · NIAID · CHILDREN'S HOSPITAL &RES CTR AT OAKLAND · PI LUCAS, ALEXANDER H. · 1995 to 2004
$2.5M
Polysaccharide Antibody RepertoiresR01AI025008 · NIAID · SCRIPPS CLINIC AND RESEARCH FOUNDATION · PI LUCAS, ALEXANDER H. · 1987 to 2010
$2.0M
CONTROL MEASURES IN AGING AND INFECTIOUS DISEASE-266945250N01AI045250 · NIAID · SAINT LOUIS UNIVERSITY · 1994 to 2003
$0k
NCRR NIH HHS M01 RR001271NCRR NIH HHS RR01271NIAID NIH HHS AI25008NIAID NIH HHS AI45250NIAID NIH HHS N01 AI045250NIAID NIH HHS R01 AI025008NIAID NIH HHS R37 AI025008
6 · The paper itself

Abstract

Antibodies specific for capsular polysaccharides play a central role in immunity to encapsulated Streptococcus pneumoniae, but little is known about their genetics or the variable (V) region polymorphisms that affect their protective function. To begin to address these issues, we used combinatorial library cloning to isolate pneumococcal polysaccharide (PPS)-specific Fab fragments from two vaccinated adults. We determined complete V region primary structures and performed antigen binding analyses of seven Fab fragments specific for PPS serotype 6B, 14, or 23F. Fabs were of the immunoglobulin G2 or A isotype. Several V(H)III gene segments (HV 3-7, 3-15, 3-23, and 3-11) were identified. V(L) regions were encoded by several kappa genes (KV 4-1, 3-15, 2-24, and 2D-29) and a lambda gene (LV 1-51). Deviation of the V(H) and V(L) regions from their assigned germ line counterparts indicated that they were somatically mutated. Fabs of the same serotype specificity isolated from a single individual differed in affinity, and these differences could be accounted for either by the extent of mutation among clonal relatives or by usage of different V-region genes. Thus, functionally disparate anti-PPS antibodies can arise within individuals both by activation of independent clones and by intraclonal somatic mutation. For one pair of clonally related Fabs, the more extensively mutated V(H) was associated with lower affinity for PPS 14, a result suggesting that somatic mutation could lead to diminished protective efficacy. These findings indicate that the PPS repertoire in the adult derives from memory B-cell populations that have class switched and undergone extensive hypermutation.

Indexed as

Combinatorial Chemistry TechniquesAdultAmino Acid SequenceAnimalsAntibodies, BacterialBacterial CapsulesBase SequenceCloning, MolecularFemaleHumansImmunoglobulin Fab FragmentsImmunoglobulin Variable RegionMaleMiddle AgedMolecular Sequence DataMutationAntibodies, BacterialImmunoglobulin Fab FragmentsImmunoglobulin Variable RegionPneumococcal Vaccines

Identifiers

PMID11159978
PMCPMC97962
OpenAlexW2105388631

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.