Evidence map›Paper›PMID 11159441›Full record

ArticleBiophysical journal2001

Pulse EPR detection of lipid exchange between protein-rich raft and bulk domains in the membrane: methodology development and its application to studies of influenza viral membrane.

K Kawasaki, J J Yin, W K Subczynski, J S Hyde, A Kusumi

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
8.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 101 citations in OpenAlex.

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  14. Review
  15. Autobiography of James S. Hyde.Applied magnetic resonance · 2017
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. High production of bacteriorhodopsin from wild type Halobacterium salinarum.Extremophiles : life under extreme conditions · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 5 institutions in 3 countries.

K KawasakiNational Institute of Bioscience and Human Technology, Tsukuba 305-8566, Japan.
J J Yin
W K Subczynski
J S Hyde
A Kusumi
Jagiellonian University · PLMedical College of Wisconsin · USNagoya University · JPNational Institute of Advanced Industrial Science and Technology · JPUnited States Food and Drug Administration · US

Funding

VERSATILE SATURATION RECOVERY EPR SPECTROMETERP41RR001008 · NCRR · MEDICAL COLLEGE OF WISCONSIN · PI HYDE, JAMES S · 1985 to 2001
$1.5M
DEVELOPMENT OF BIOMEDICAL ESR INSTRUMENTATIONR01GM027665 · NIGMS · MEDICAL COLLEGE OF WISCONSIN · PI HYDE, JAMES S · 1985 to 2002
$967k
NITROXIDE RADICAL SPIN LABEL METHODSR01GM022923 · NIGMS · MEDICAL COLLEGE OF WISCONSIN · PI HYDE, JAMES S · 1985 to 1988
–
NITROXIDE RADICAL SPIN LABEL METHODSR37GM022923 · NIGMS · MEDICAL COLLEGE OF WISCONSIN · PI HYDE, JAMES S · 1989 to 1998
–
NCRR NIH HHS RR01008NIGMS NIH HHS GM22923NIGMS NIH HHS GM27665
6 · The paper itself

Abstract

A pulse saturation-recovery electron paramagnetic resonance (EPR) method has been developed that allows estimation of the exchange rates of a spin-labeled lipid between the bulk domain and the protein-rich membrane domain, in which the rate of collision between the spin label and molecular oxygen is reduced (slow-oxygen transport domain, or SLOT domain). It is based on the measurements of saturation-recovery signals of a lipid spin label as a function of concentrations of both molecular oxygen and the spin label. Influenza viral membrane, one of the simplest paradigms for the study of biomembranes, showed the presence of two membrane domains with slow and fast collision rates with oxygen (a 16-fold difference) at 30 degrees C. The outbound rate from and the inbound rate into the SLOT domain (or possibly the rate of the domain disintegration and formation) were estimated to be 7.7 x 10(4) and 4.6 x 10(4) s(-1), (15 micros residency time), respectively, indicating that the SLOT domain is highly dynamic and that the entire SLOT domain represents about one-third of the membrane area. Because the oxygen transport rate in the SLOT domain is a factor of two smaller than that in purple membrane, where bacteriorhodopsin is aggregated, we propose that the SLOT domain in the viral membrane is the cholesterol-rich raft domain stabilized by the trimers of hemagglutinin and/or the tetramers of neuraminidase.

Indexed as

Biophysical PhenomenaBiophysicsCholesterolElectron Spin Resonance SpectroscopyHemagglutinins, ViralMembrane LipidsMembrane ProteinsModels, BiologicalNeuraminidaseOrthomyxoviridaeOxygenProtein Structure, TertiaryViral Envelope ProteinsCholesterolHemagglutinins, ViralMembrane LipidsMembrane ProteinsNeuraminidaseOxygenViral Envelope Proteins

Identifiers

PMID11159441
PMCPMC1301272
OpenAlexW2114552041

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.