Evidence map›Paper›PMID 11159207›Full record

ArticleThe American journal of pathology2001

API2-MALT1 fusion transcripts involved in mucosa-associated lymphoid tissue lymphoma: multiplex RT-PCR detection using formalin-fixed paraffin-embedded specimens.

H Inagaki, M Okabe, M Seto, S Nakamura, R Ueda, T Eimoto

Open access · bronzeAbstract read
In one paragraph

Article in The American journal of pathology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
7.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 104 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Cellular-level characterization of B cells infiltrating pulmonary MALT lymphoma tissues.Virchows Archiv : an international journal of pathology · 2016
    Article
  7. Article
  8. Marginal zone lymphomas involving meningeal dura: possible link to IgG4-related diseases.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2011
    Article
  9. Article
  10. Marginal zone lymphomas in children and the young adult population; characterization of genetic aberrations by FISH and RT-PCR.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2010
    Article
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  14. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

H InagakiDepartment of Pathology, Nagoya City University Medical School, Nagoya, Japan. hinagi@med.nagoya-cu.ac.jp
M Okabe
M Seto
S Nakamura
R Ueda
T Eimoto
Nagoya City University · JPAichi Cancer Center · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Malignant lymphoma of mucosa-associated lymphoid tissue (MALT) type is a distinct clinicopathological disease entity in the category of extranodal marginal zone B-cell lymphoma. Recently, we and others have shown that the API2 gene on chromosome 11 and the MALT1 gene on chromosome 18 are fused as a result of t(11;18)(q21;q21) in MALT lymphomas. Here we report a detection assay that can be used for formalin-fixed, paraffin-embedded specimens. It consists of a multiplex one-tube reverse transcriptase-polymerase chain reaction (RT-PCR) followed by three parallel multiplex nested polymerase chain reactions. Eight variants of the fusion transcripts have been reported to date. When these variants were used as positive controls, all were successfully detected. The subsequent direct sequencing confirmed the results. Using this rapid and simple method, we could detect API2-MALT1 fusion transcripts in 5 of 15 (33%) archival cases of MALT lymphoma for a frequency comparable with those of RT-PCR assays using frozen materials. The lung was the preferential anatomical site of origin of MALT lymphomas harboring API2-MALT1 fusion. No fusion transcript was detected in any of 20 high-grade B-cell lymphomas. Our multiplex RT-PCR assay, which can be used for routinely-processed paraffin samples, should serve as a useful molecular tool for clarifying the clinicopathological significance of API2-MALT1 fusion in MALT lymphoma.

Indexed as

AdultAgedAged, 80 and overDNA, ComplementaryFemaleFormaldehydeHumansLymphoma, B-Cell, Marginal ZoneMaleMiddle AgedOncogene Proteins, FusionParaffin EmbeddingPolymerase Chain ReactionReproducibility of ResultsReverse Transcriptase Polymerase Chain ReactionRNA, NeoplasmAPI2-MALT1 fusion protein, humanDNA, ComplementaryFormaldehydeOncogene Proteins, FusionRNA, Neoplasm

Identifiers

PMID11159207
PMCPMC1850327
OpenAlexW1555009755

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.