Evidence map›Paper›PMID 11157936›Full record

ArticleJournal of bacteriology2001

Novel genes affecting urease acivity in Actinobacillus pleuropneumoniae.

J T Bossé, H D Gilmour, J I MacInnes

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Rationally designedAnimal diseases · 2021
    Article
  5. Comparative Genomics ofInternational journal of genomics · 2020
    Article
  6. Ni(II) Interactions in BorealFrontiers in microbiology · 2019
    Article
  7. Isolation and molecular characterization of a urease-negative Actinobacillus pleuropneumoniae mutant.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2018
    Article
  8. Article
  9. Article
  10. Biosynthesis of the urease metallocenter.The Journal of biological chemistry · 2013
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Functional characterization of Actinobacillus pleuropneumoniae urea transport protein, ApUT.American journal of physiology. Regulatory, integrative and comparative physiology · 2009
    Article
  17. Article
  18. Interplay of metal ions and urease.Metallomics : integrated biometal science · 2009
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

J T BosséDepartment of Pathobiology, University of Guelph, Guelph, Ontario, Canada NIG 2W1.
H D Gilmour
J I MacInnes
University of Guelph · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Characterization of a series of urease-negative transposon mutations of Actinobacillus pleuropneumoniae revealed that many of the mutants had insertions 2 to 4 kbp upstream of the urease gene cluster. A 5-kbp upstream region of DNA was sequenced and found to contain six open reading frames (ORFs) transcribed in the same orientation as the urease genes. As well, a partial ORF, apuR, 202 bp upstream of these six ORFs, is transcribed in the opposite orientation. The predicted product of this partial ORF shows homology with many members of the LysR family of transcriptional regulators. Five of the ORFs (cbiKLMQO) appear to form an operon encoding a putative nickel and cobalt periplasmic permease system. The cbiM and cbiQ genes encode proteins that have sequence similarity with known cobalt transport membrane proteins, and the cbiO gene encodes a cobalt transport ATP-binding protein homologue. The product of the cbiK gene is predicted to be the periplasmic-binding-protein component of the system, though it does not show any sequence similarity with CbiN, the cobalt-binding periplasmic protein. Escherichia coli clones containing this putative transport operon together with the urease genes of A. pleuropneumoniae were urease positive when grown in unsupplemented Luria-Bertani broth, whereas a clone containing only the minimal urease gene cluster required the addition of high concentrations of NiCl(2) for full urease activity. This result supports the hypothesis that nickel is a substrate for this permease system. The sixth ORF, utp, appears to encode an integral membrane protein which has significant sequence identity with mammalian urea transport proteins, though its function in A. pleuropneumoniae remains to be determined.

Indexed as

Genes, BacterialActinobacillus pleuropneumoniaeAnimalsApoenzymesBiological TransportCobaltMembrane Transport ProteinsMolecular Sequence DataMultigene FamilyMutagenesis, InsertionalNickelOpen Reading FramesPleuropneumoniaSequence Analysis, DNASwineSwine DiseasesApoenzymesCobaltMembrane Transport ProteinsNickelUrease

Identifiers

PMID11157936
PMCPMC94997
OpenAlexW2152412632

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.