Evidence map›Paper›PMID 11157212›Full record

ArticleApplied and environmental microbiology2001

Combined molecular and biochemical approach identifies Aspergillus japonicus and Aspergillus aculeatus as two species.

L Parenicová, P Skouboe, J Frisvad, R A Samson, L Rossen, M ten Hoor-Suykerbuyk, J Visser

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
5.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 89 citations in OpenAlex.

  1. Article
  2. Review
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  4. Polyphasic Characterization of FourJournal of fungi (Basel, Switzerland) · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

L ParenicováSection of Molecular Genetics of Industrial Microorganisms, Wageningen University, NL-6703 HA Wageningen, The Netherlands.
P Skouboe
J Frisvad
R A Samson
L Rossen
M ten Hoor-Suykerbuyk
J Visser
Wageningen University & Research · NLHydrobiological Institute · MKGGz centraal · NLTechnical University of Denmark · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We examined nine Aspergillus japonicus isolates and 10 Aspergillus aculeatus isolates by using molecular and biochemical markers, including DNA sequences of the ITS1-5.8S rRNA gene-ITS2 region, restriction fragment length polymorphisms (RFLP), and secondary-metabolite profiles. The DNA sequence of the internal transcribed spacers (ITS1 and ITS2) and the 5.8S rRNA gene could not be used to distinguish between A. japonicus and A. aculeatus but did show that these two taxa are more closely related to each other than to other species of black aspergilli. Aspergillus niger pyruvate kinase (pkiA) and pectin lyase A (pelA) and Agaricus bisporus 28S rRNA genes, which were used as probes in the RFLP analysis, revealed clear polymorphism between these two taxa. The A. niger pkiA and pelA probes placed six strains in an A. japonicus group and 12 isolates in an A. aculeatus group, which exhibited intraspecific variation when they were probed with the pelA gene. The secondary-metabolite profiles supported division of the isolates into the two species and differed from those of other black aspergilli. The strains classified as A. japonicus produced indole alkaloids and a polar metabolite, while the A. aculeatus isolates produced neoxaline, okaramins, paraherquamidelike compounds, and secalonic acid. A. aculeatus CBS 114.80 showed specific RFLP patterns for all loci examined. The secondary-metabolite profile of strain CBS 114.80 also differed from those of A. japonicus and A. aculeatus. Therefore, this strain probably represents a third taxon. This study provides unambiguous criteria for establishing the taxonomic positions of isolates of black aspergilli, which are important in relation to industrial use and legal protection of these organisms.

Indexed as

Polymorphism, Restriction Fragment LengthAspergillusDNA Restriction EnzymesDNA, Ribosomal SpacerGenes, rRNAMolecular Sequence DataPolysaccharide-LyasesPyruvate KinaseRNA, Ribosomal, 28SRNA, Ribosomal, 5.8SSequence Analysis, DNASpecies SpecificityDNA Restriction EnzymesDNA, Ribosomal Spacerpectin lyasePolysaccharide-LyasesPyruvate KinaseRNA, Ribosomal, 28SRNA, Ribosomal, 5.8S

Identifiers

PMID11157212
PMCPMC92616
OpenAlexW2097053837

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.