Evidence map›Paper›PMID 11156984›Full record

ArticleGenetics2001

Trichinella spiralis mtDNA: a nematode mitochondrial genome that encodes a putative ATP8 and normally structured tRNAS and has a gene arrangement relatable to those of coelomate metazoans.

D V Lavrov, W M Brown

Abstract readComparative Study
In one paragraph

Article in Genetics, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Comprehensive mitochondrial genomics ofFrontiers in veterinary science · 2025
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Two-FoldAnimals : an open access journal from MDPI · 2023
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Complete Mitogenomes ofAnimals : an open access journal from MDPI · 2022
    Article
  20. Article

28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

D V LavrovDepartment of Biology, University of Michigan, Ann Arbor, Michigan 48109-1048, USA. dlavrov@bch.umontreal.ca
W M Brown

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The complete mitochondrial DNA (mtDNA) of the nematode Trichinella spiralis has been amplified in four overlapping fragments and 16,656 bp of its sequence has been determined. This sequence contains the 37 genes typical of metazoan mtDNAs, including a putative atp8, which is absent from all other nematode mtDNAs examined. The genes are transcribed from both mtDNA strands and have an arrangement relatable to those of coelomate metazoans, but not to those of secernentean nematodes. All protein genes appear to initiate with ATN codons, typical for metazoans. Neither TTG nor GTT start codons, inferred for several genes of other nematodes, were found. The 22 T. spiralis tRNA genes fall into three categories: (i) those with the potential to form conventional "cloverleaf" secondary structures, (ii) those with TPsiC arm + variable arm replacement loops, and (iii) those with DHU-arm replacement loops. Mt-tRNA(R) has a 5'-UCG-3' anticodon, as in most other metazoans, instead of the very unusual 5'-ACG-3' present in the secernentean nematodes. The sequence also contains a large repeat region that is polymorphic in size at the population and/or individual level.

Indexed as

GenomeAdenosine TriphosphatasesAnimalsBase SequenceBrachyuraCodonDNADNA, MitochondrialHumansMitochondrial Proton-Translocating ATPasesModels, GeneticMolecular Sequence DataNucleic Acid ConformationProtein BiosynthesisProton-Translocating ATPasesRNA, RibosomalAdenosine TriphosphatasesCodonDNADNA, MitochondrialMitochondrial Proton-Translocating ATPasesMT-ATP6 protein, humanProton-Translocating ATPasesRNA, RibosomalRNA, Transfer

Identifiers

PMID11156984
PMCPMC1461501

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.