Evidence map›Paper›PMID 11142376›Full record

ArticleRNA (New York, N.Y.)2000

The mRNA export in Caenorhabditis elegans is mediated by Ce-NXF-1, an ortholog of human TAP/NXF and Saccharomyces cerevisiae Mex67p.

W Tan, A S Zolotukhin, J Bear, D J Patenaude, B K Felber

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in RNA (New York, N.Y.), 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 106 citations in OpenAlex.

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  17. Dm nxf1/sbr gene affects the formation of meiotic spindle in female Drosophila melanogaster.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2009
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

W TanBasic Research Laboratory, Human Retrovirus Pathogenesis Section, National Cancer Institute-Frederick Cancer Research and Development Center, Maryland 21702-1201, USA.
A S Zolotukhin
J Bear
D J Patenaude
B K Felber
Frederick National Laboratory for Cancer Research · USNational Cancer Institute · US

Funding

Posttranscriptional control of gene expressionZIABC010334 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI FELBER, BARBARA K · 2009 to 2025
$15.1M
Posttranscriptional control of gene expressionZ01BC010334 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI FELBER, BARBARA K · 2000 to 2008
$1.6M
6 · The paper itself

Abstract

Human TAP and Saccharomyces cerevisiae Mex67p belong to a family of proteins that mediate mRNA export. Computer searches identified previously two Caenorhabditis elegans genes, C15H11.3 and C115H11.6, that encode putative homologs of hTAP and Mex67p (Segref et al., EMBO J, 1997, 16:3256-3271). Using RNA interference experiments in C. elegans, we found that functional knockout of C15H11.3 resulted in nuclear accumulation of poly(A)-containing RNAs and was lethal for both embryos and adult nematodes. No embryonic or progeny abnormality was observed in functional knockout of C15H11.6. Taken together, these data established that the C15H11.3 gene product is an ortholog of hTAP and Mex67p; thus, it was named Ce-NXF-1. Ce-NXF-1 binds RNA directly and is a nucleocytoplasmic shuttle protein accumulating in the nucleoplasm and at the nuclear rim. The rim association is mediated via unique signals present in the C-terminal portion of all TAP/NXF and Mex67p proteins. This region was shown to interact with the FG-repeat domains of nucleoporins Nup98, Nup153, and Nup214, indicating that the rim association occurs through components of the nuclear pore complex. In summary, Ce-NXF-1 belongs together with hTAP and Mex67p to a family of proteins that participate in mRNA export and can provide a direct molecular link between mRNAs and components of the nuclear pore complex. Therefore, despite differences in mRNA metabolism between these species, they utilize a conserved mRNA transport mechanism.

Indexed as

Caenorhabditis elegans ProteinsNuclear Pore Complex ProteinsNucleocytoplasmic Transport ProteinsSaccharomyces cerevisiae ProteinsAmino Acid SequenceAnimalsATP-Binding Cassette TransportersATP Binding Cassette Transporter, Subfamily B, Member 2Caenorhabditis elegansFluorescent Antibody Technique, IndirectGenes, LethalGene TargetingHeLa CellsHelminth ProteinsHumansMembrane ProteinsATP-Binding Cassette TransportersATP Binding Cassette Transporter, Subfamily B, Member 2Caenorhabditis elegans ProteinsHelminth ProteinsMembrane ProteinsMEX67 protein, S cerevisiaenuclear pore complex protein 98Nuclear Pore Complex ProteinsNuclear ProteinsNucleocytoplasmic Transport ProteinsNUP153 protein, humanNUP214 protein, humanNXF-1 protein, C elegansNXF1 protein, humanProtein Sorting SignalsRecombinant Fusion ProteinsRNA-Binding ProteinsRNA, HelminthRNA, MessengerSaccharomyces cerevisiae ProteinsTAP1 protein, human

Identifiers

PMID11142376
PMCPMC1370046
OpenAlexW2140044545

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.