Evidence map›Paper›PMID 11139488›Full record

ArticleGenetics2001

The rye mutants identify a role for Ssn/Srb proteins of the RNA polymerase II holoenzyme during stationary phase entry in Saccharomyces cerevisiae.

Y W Chang, S C Howard, Y V Budovskaya, J Rine, P K Herman

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 48 citations in OpenAlex.

  1. Cyclin-dependent kinases: Masters of the eukaryotic universe.Wiley interdisciplinary reviews. RNA · 2023
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  2. Quiescence inAnnual review of genetics · 2022
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  3. Article
  4. CDK8-Novel Therapeutic Opportunities.Pharmaceuticals (Basel, Switzerland) · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Y W ChangProgram in Molecular, Cellular and Developmental Biology, The Ohio State University, Columbus, Ohio 43210, USA.
S C Howard
Y V Budovskaya
J Rine
P K Herman
The Ohio State University · USUniversity of California, Berkeley · US

Funding

REGULATION OF THE STEROL BIOSYNTHETIC PATHWAY IN YEASTR01GM035827 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI RINE, JASPER D · 1986 to 2005
$2.0M
NIGMS NIH HHS GM 35827
6 · The paper itself

Abstract

Saccharomyces cerevisiae cells enter into a distinct resting state, known as stationary phase, in response to specific types of nutrient deprivation. We have identified a collection of mutants that exhibited a defective transcriptional response to nutrient limitation and failed to enter into a normal stationary phase. These rye mutants were isolated on the basis of defects in the regulation of YGP1 expression. In wild-type cells, YGP1 levels increased during the growth arrest caused by nutrient deprivation or inactivation of the Ras signaling pathway. In contrast, the levels of YGP1 and related genes were significantly elevated in the rye mutants during log phase growth. The rye defects were not specific to this YGP1 response as these mutants also exhibited multiple defects in stationary phase properties, including an inability to survive periods of prolonged starvation. These data indicated that the RYE genes might encode important regulators of yeast cell growth. Interestingly, three of the RYE genes encoded the Ssn/Srb proteins, Srb9p, Srb10p, and Srb11p, which are associated with the RNA polymerase II holoenzyme. Thus, the RNA polymerase II holoenzyme may be a target of the signaling pathways responsible for coordinating yeast cell growth with nutrient availability.

Indexed as

MutationSaccharomyces cerevisiae ProteinsCell DivisionFungal ProteinsGene Expression Regulation, FungalGlycoproteinsHoloenzymesInterphaseRNA, FungalRNA, MessengerRNA Polymerase IISaccharomyces cerevisiaeFungal ProteinsGlycoproteinsHoloenzymesRNA, FungalRNA, MessengerRNA Polymerase IISaccharomyces cerevisiae ProteinsYGP1 protein, S cerevisiae

Identifiers

PMID11139488
PMCPMC1461474
OpenAlexW2128098474

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.