Evidence map›Paper›PMID 11136822›Full record

ArticleThe Journal of experimental medicine2001

Efficient identification of novel HLA-A(*)0201-presented cytotoxic T lymphocyte epitopes in the widely expressed tumor antigen PRAME by proteasome-mediated digestion analysis.

J H Kessler, N J Beekman, S A Bres-Vloemans, P Verdijk, P A van Veelen, A M Kloosterman-Joosten, D C Vissers, G J ten Bosch, M G Kester, A Sijts and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 83 papers.

0numbers the graph read from it
0cells of the map it votes in
83citing papers in PubMed
8.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

83 citing papers in PubMed, 263 citations in OpenAlex.

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  12. Neoantigen Targetability in Progressive Advanced Melanoma.Clinical cancer research : an official journal of the American Association for Cancer Research · 2023
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  19. Neo-Splicetopes in Tumor Therapy: A Lost Case?Frontiers in immunology · 2022
    Review
  20. Article

23 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 2 countries.

J H KesslerDepartment of Immunohematology and Blood Transfusion, Leiden University Medical Center, 2300 RC Leiden, The Netherlands. kesslerj@worldonline.nl
N J Beekman
S A Bres-Vloemans
P Verdijk
P A van Veelen
A M Kloosterman-Joosten
D C Vissers
G J ten Bosch
M G Kester
A Sijts
J Wouter Drijfhout
F Ossendorp
R Offringa
C J Melief
Leiden University Medical Center · NLHumboldt-Universität zu Berlin · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We report the efficient identification of four human histocompatibility leukocyte antigen (HLA)-A(*)0201-presented cytotoxic T lymphocyte (CTL) epitopes in the tumor-associated antigen PRAME using an improved "reverse immunology" strategy. Next to motif-based HLA-A(*)0201 binding prediction and actual binding and stability assays, analysis of in vitro proteasome-mediated digestions of polypeptides encompassing candidate epitopes was incorporated in the epitope prediction procedure. Proteasome cleavage pattern analysis, in particular determination of correct COOH-terminal cleavage of the putative epitope, allows a far more accurate and selective prediction of CTL epitopes. Only 4 of 19 high affinity HLA-A(*)0201 binding peptides (21%) were found to be efficiently generated by the proteasome in vitro. This approach avoids laborious CTL response inductions against high affinity binding peptides that are not processed and limits the number of peptides to be assayed for binding. CTL clones induced against the four identified epitopes (VLDGLDVLL, PRA(100-108); SLYSFPEPEA, PRA(142-151); ALYVDSLFFL, PRA(300-309); and SLLQHLIGL, PRA(425-433)) lysed melanoma, renal cell carcinoma, lung carcinoma, and mammary carcinoma cell lines expressing PRAME and HLA-A(*)0201. This indicates that these epitopes are expressed on cancer cells of diverse histologic origin, making them attractive targets for immunotherapy of cancer.

Indexed as

Antigen PresentationAmino Acid SequenceAntigens, NeoplasmBase SequenceCell Line, TransformedCysteine EndopeptidasesCytotoxicity, ImmunologicDNA PrimersEpitopesHLA-A AntigensHumansMolecular Sequence DataMultienzyme ComplexesProteasome Endopeptidase ComplexProtein BindingRNA, MessengerAntigens, NeoplasmCysteine EndopeptidasesDNA PrimersEpitopesHLA-A AntigensMultienzyme ComplexesProteasome Endopeptidase ComplexRNA, MessengerRNA, Neoplasm

Identifiers

PMID11136822
PMCPMC2195886
OpenAlexW2132925083

What OpenQuestion holds

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LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.