Evidence map›Paper›PMID 11133965›Full record

ArticleJournal of bacteriology2001

nag genes of Ralstonia (formerly Pseudomonas) sp. strain U2 encoding enzymes for gentisate catabolism.

N Y Zhou, S L Fuenmayor, P A Williams

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In one paragraph

Article in Journal of bacteriology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 90 papers.

0numbers the graph read from it
0cells of the map it votes in
90citing papers in PubMed
11.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

90 citing papers in PubMed, 217 citations in OpenAlex.

  1. Genomic and transcriptomic insights intoMicrobiology (Reading, England) · 2026
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  3. Abscisic acid metabolism to dehydrovomifoliol byFrontiers in microbiology · 2026
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  14. McbG, a LysR Family Transcriptional Regulator, Activates theApplied and environmental microbiology · 2021
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  17. Article
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  19. Review
  20. Article

30 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

N Y ZhouSchool of Biological Sciences, University of Wales, Bangor, Gwynedd LL57 2UW, Wales, United Kingdom.
S L Fuenmayor
P A Williams
Bangor University · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ralstonia sp. strain U2 metabolizes naphthalene via gentisate to central metabolites. We have cloned and sequenced a 21.6-kb region spanning the nag genes. Upstream of the pathway genes are nagY, homologous to chemotaxis proteins, and nagR, a regulatory gene of the LysR family. Divergently transcribed from nagR are the genes for conversion of naphthalene to gentisate (nagAaGHAbAcAdBFCQED) (S. L. Fuenmayor, M. Wild, A. L. Boyes, and P. A. Williams, J. Bacteriol. 180:2522-2530, 1998), which except for the insertion of nagGH, encoding the salicylate 5-hydroxylase, are homologous to and in the same order as the genes in the classical upper pathway operon described for conversion of naphthalene to salicylate found in the NAH7 plasmid of Pseudomonas putida PpG7. Downstream of nahD is a cluster of genes (nagJIKLMN) which are probably cotranscribed with nagAaGHAbAcAdBFCQED as a single large operon. By cloning into expression vectors and by biochemical assays, three of these genes (nagIKL) have been shown to encode the enzymes involved in the further catabolism of gentisate to fumarate and pyruvate. NagI is a gentisate 1,2-dioxygenase which converts gentisate to maleylpyruvate and is also able to catalyze the oxidation of some substituted gentisates. NagL is a reduced glutathione-dependent maleylpyruvate isomerase catalyzing the isomerization of maleylpyruvate to fumarylpyruvate. NagK is a fumarylpyruvate hydrolase which hydrolyzes fumarylpyruvate to fumarate and pyruvate. The three other genes (nagJMN) have also been cloned and overexpressed, but no biochemical activities have been attributed to them. NagJ is homologous to a glutathione S-transferase, and NagM and NagN are proteins homologous to each other and to other proteins of unknown function. Downstream of the operon is a partial sequence with homology to a transposase.

Indexed as

DioxygenasesGenes, BacterialGentisatesBacterial Proteinscis-trans-IsomerasesCloning, MolecularDicarboxylic AcidsHydrolasesHydroxybenzoatesModels, BiologicalMolecular Sequence DataNaphthalenesOxygenasesPimelic AcidsPseudomonasSequence Analysis, DNA2,5-dihydroxybenzoic acidBacterial Proteinscis-trans-IsomerasesDicarboxylic AcidsDioxygenasesfumarylpyruvatefumarylpyruvate hydrolasegentisate 1,2-dioxygenaseGentisatesHydrolasesHydroxybenzoatesmaleylpyruvate isomerasemaleylpyruvic acidnaphthaleneNaphthalenesOxygenasesPimelic Acids

Identifiers

PMID11133965
PMCPMC94927
OpenAlexW2010830252

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.