Evidence map›Paper›PMID 11125132›Full record

ArticleNucleic acids research2001

ICB database: the gyrB database for identification and classification of bacteria.

K Watanabe, J Nelson, S Harayama, H Kasai

Abstract read
In one paragraph

Article in Nucleic acids research, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. Comparative transcriptomics of closely relatedFrontiers in microbiology · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Isolation, identification and characteristics ofFrontiers in microbiology · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Quantification of Human Oral and FecalFrontiers in microbiology · 2019
    Article
  14. Article
  15. Article
  16. Emergence shapes the structure of the seed microbiota.Applied and environmental microbiology · 2015
    Article
  17. Article
  18. Review
  19. Selective enumeration strategies for Brevundimonas diminuta from drinking water.Journal of industrial microbiology & biotechnology · 2010
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

K WatanabeMarine Biotechnology Institute, Kamaishi Laboratories 3-75-1 Heita, Kamaishi, Iwate 026-0001, Japan.
J Nelson
S Harayama
H Kasai

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Identification and Classification of Bacteria (ICB) database (http:/www.mbio.co.jp/icb) contains currently available information about the DNA gyrase subunit B (gyrB) gene in bacteria. The database is designed to provide the scientific community with a reference point for using gyrB as an evolutionary and taxonomic marker. Nucleic and amino acid sequence data are currently available for over 850 strains, along with alignments at several different taxonomic levels and an exhaustive review of primer selection and background information.

Indexed as

Databases, FactualBacteriaDNA GyraseDNA Topoisomerases, Type IIInternetSequence AlignmentDNA GyraseDNA Topoisomerases, Type II

Identifiers

PMID11125132
PMCPMC29849

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.