Evidence map›Paper›PMID 11121059›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2000

N-terminal RAG1 frameshift mutations in Omenn's syndrome: internal methionine usage leads to partial V(D)J recombination activity and reveals a fundamental role in vivo for the N-terminal domains.

S Santagata, C A Gomez, C Sobacchi, F Bozzi, M Abinun, S Pasic, P Cortes, P Vezzoni, A Villa

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 68 citations in OpenAlex.

  1. Article
  2. Generation of antigen-specific mature T cells from RAG1Nature biomedical engineering · 2024
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  7. Review
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  11. RAG Deficiency: Two Genes, Many Diseases.Journal of clinical immunology · 2018
    Review
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  15. Review
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

S SantagataRuttenberg Cancer Center, Immunobiology Center, Mount Sinai School of Medicine, 1425 Madison Avenue, New York, NY 10029, USA.
C A Gomez
C Sobacchi
F Bozzi
M Abinun
S Pasic
P Cortes
P Vezzoni
A Villa
IRCCS Ospedale San Raffaele · IT

Funding

Mount Sinai Nephrology Research Training GrantT32DK007757 · NIDDK · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI CAMPBELL, KIRK N, HE, JOHN CIJIANG · 1998 to 2022
$3.8M
MECHANISM OF CODING JOINT FORMATIONR01AI045996 · NIAID · ROCKEFELLER UNIVERSITY · PI CORTES, PATRICIA · 1999 to 2003
$1.1M
CONFOCAL MICROSCOPE FACILITYS10RR009145 · NCRR · MOUNT SINAI SCHOOL OF MEDICINE OF CUNY · PI MASUR, SANDRA K · 1994 to 1994
–
NCRR NIH HHS 1 S10 RR0 9145-01NIAID NIH HHS AI45996-02NIAID NIH HHS R01 AI045996NIDDK NIH HHS DK07757NIDDK NIH HHS T32 DK007757Telethon E.0917
6 · The paper itself

Abstract

Omenn's syndrome is an autosomal recessive primary immunodeficiency characterized by variable numbers of T lymphocytes of limited clonality, hypereosinophilia, and high IgE levels with a paradoxical absence of circulating B lymphocytes. We have previously attributed this disorder to missense mutations that render the RAG1/RAG2 recombinase only partially active. Here we report seven Omenn's patients with a novel class of genetic lesions: frameshift mutations within the 5' coding region of RAG1. Interestingly, we demonstrate in transient expression experiments that these frameshift deletion alleles remain partially functional for both deletional and inversional recombination and can hence explain the partial rearrangement phenotype observed in these patients. The rearrangement activity is mediated by truncated RAG1 proteins that are generated by alternative ATG usage 3' to the frameshift deletion and that demonstrate improper cellular localization. Taken together, our results suggest a novel mechanism for the development of immunodeficiency in a subset of Omenn's syndrome patients.

Indexed as

Frameshift MutationRecombination, GeneticAllelesCell Line, TransformedDNA-Binding ProteinsDNA NucleotidyltransferasesHomeodomain ProteinsHumansImmunologic Deficiency SyndromesMethionineNuclear ProteinsProtein Structure, TertiaryVDJ RecombinasesDNA-Binding ProteinsDNA NucleotidyltransferasesHomeodomain ProteinsMethionineNuclear ProteinsRAG-1 proteinRAG2 protein, humanVDJ RecombinasesV(D)J recombination activating protein 2

Identifiers

PMID11121059
PMCPMC18960
OpenAlexW2070109046

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.