Evidence map›Paper›PMID 11116100›Full record

ArticleGenome research2000

A large database of chicken bursal ESTs as a resource for the analysis of vertebrate gene function.

I Abdrakhmanov, D Lodygin, P Geroth, H Arakawa, A Law, J Plachy, B Korn, J M Buerstedde

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Article in Genome research, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 88 citations in OpenAlex.

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  13. Development of a gene-based radiation hybrid map of chicken Chromosome 7 and comparison to human and mouse.Mammalian genome : official journal of the International Mammalian Genome Society · 2004
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  14. A radiation hybrid map of chicken Chromosome 4.Mammalian genome : official journal of the International Mammalian Genome Society · 2004
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 2 countries.

I AbdrakhmanovHeinrich-Pette-Institut for Experimental Virology and Immunology, Department of Cellular Immunology, 20251 Hamburg, Germany.
D Lodygin
P Geroth
H Arakawa
A Law
J Plachy
B Korn
J M Buerstedde
Roslin Institute · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chicken B cells create their immunoglobulin repertoire within the Bursa of Fabricius by gene conversion. The high homologous recombination activity is shared by the bursal B-cell-derived DT40 cell line, which integrates transfected DNA constructs at high rates into its endogenous loci. Targeted integration in DT40 is used frequently to analyze the function of genes by gene disruption. In this paper, we describe a large database of >7000 expressed sequence tags (ESTs) from bursal lymphocytes that should be a valuable resource for the identification of gene disruption targets in DT40. ESTs of interest can be recognized easily by online or keyword searches. Because the database reflects the gene expression profile of bursal lymphocytes, it provides valuable hints as to which genes might be involved in B-cell-specific processes related to immunoglobulin repertoire formation, signal transduction, transcription, and apoptosis. This large collection of chicken ESTs will also be useful for gene expression studies and comparative gene mapping within the chicken genome project. Details of the bursal EST sequencing project and access to database search forms can be found on the DT40 web site (http://genetics.hpi.uni-hamburg.de/dt40.html).

Indexed as

Databases, FactualExpressed Sequence TagsAnimalsBursa of FabriciusChickensComputational BiologyGene Expression ProfilingGenesGenes, ImmunoglobulinHumansInternetLymphocytesMolecular Sequence DataMultigene FamilySequence AlignmentSequence Homology, Nucleic Acid

Identifiers

PMID11116100
PMCPMC313076
OpenAlexW2048841761

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.