Evidence map›Paper›PMID 11112786›Full record

ArticleThe Journal of biological chemistry2001

A role for poly(ADP-ribose) polymerase in the transcriptional regulation of the melanoma growth stimulatory activity (CXCL1) gene expression.

C Nirodi, S NagDas, S P Gygi, G Olson, R Aebersold, A Richmond

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed, 1 pooled it
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 1 synthesis or guideline pooled it, 87 citations in OpenAlex.

  1. High mobility group A protein-2 as a tumor cancer diagnostic and prognostic marker: a systematic review and meta-analysis.European journal of cancer prevention : the official journal of the European Cancer Prevention Organisation (ECP) · 2020
    Pooled it
  2. Review
  3. International journal of molecular sciences · 2022
    Review
  4. Article
  5. Okamoto model for necrosis and its expansions, CD38-cyclic ADP-ribose signal system for intracellular CaProceedings of the Japan Academy. Series B, Physical and biological sciences · 2021
    Article
  6. Article
  7. Review
  8. Ethanol Extract ofBioMed research international · 2019
    Article
  9. PARP1 in Carcinomas and PARP1 Inhibitors as Antineoplastic Drugs.International journal of molecular sciences · 2017
    Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Chemokines in health and disease.Experimental cell research · 2011
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

C NirodiDepartment of Cell Biology, Vanderbilt University School of Medicine, Nashville, Tennessee 37232, USA.
S NagDas
S P Gygi
G Olson
R Aebersold
A Richmond
Vanderbilt University · USHarvard University · USInstitute for Systems Biology · US

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MATTHEW J TYSKA · 1995 to 2026
$172.8M
Targeting the NF-kappaB Pathway in MelanomaR01CA116021 · NCI · VANDERBILT UNIVERSITY · PI RICHMOND, ANN, YAN, CHI · 2005 to 2024
$6.7M
Stress-Evoked Muscle Activity in Occupational MyalgiaR01AR056704 · NIAMS · UNIVERSITY OF COLORADO DENVER · PI MONROE, KATRINA S. · 2010 to 2013
$1.2M
REGULATION OF EXPRESSION OF MGSA/GRO GENES IN MELANOMAR01CA056704 · NCI · VANDERBILT UNIVERSITY · PI RICHMOND, ANN · 1993 to 2001
$482k
BLRD VA IK6 BX005225NCI NIH HHS CA56704NCI NIH HHS P30 CA068485NCI NIH HHS R01 CA056704NCI NIH HHS R01 CA116021NIAMS NIH HHS 5P30AR4194NIAMS NIH HHS R01 AR056704
6 · The paper itself

Abstract

The melanoma growth stimulatory activity/growth-regulated protein, CXCL1, is constitutively expressed at high levels during inflammation and progression of melanocytes into malignant melanoma. It has been shown previously that CXCL1 overexpression in melanoma cells is due to increased transcription as well as stability of the CXCL1 message. The transcription of CXCL1 is regulated through several cis-acting elements including Sp1, NF-kappaB, HMGI(Y), and the immediate upstream region (IUR) element (nucleotides -94 to -78), which lies immediately upstream to the nuclear factor kappaB (NF-kappaB) element. Previously, it has been shown that the IUR is necessary for basal and cytokine-induced transcription of the CXCL1 gene. UV cross-linking and Southwestern blot analyses indicate that the IUR oligonucleotide probe selectively binds a 115-kDa protein. In this study, the IUR element has been further characterized. We show here that proximity of the IUR element to the adjacent NF-kappaB element is critical to its function as a positive regulatory element. Using binding site oligonucleotide affinity chromatography, we have selectively purified the 115-kDa IUR-F. Mass spectrometry/mass spectrometry/matrix-assisted laser desorption ionization/time of flight spectroscopy and amino acid analysis as well as microcapillary reverse phase chromatography electrospray ionization tandem mass spectrometry identified this protein as the 114-kDa poly(ADP-ribose) polymerase (PARP1). Furthermore, 3-aminobenzamide, an inhibitor of PARP-specific ADP-ribosylation, inhibits CXCL1 promoter activity and reduces levels of CXCL1 mRNA. The data point to the possibility that PARP may be a coactivator of CXCL1 transcription.

Indexed as

Chemokines, CXCIntercellular Signaling Peptides and ProteinsAdenosine Diphosphate RiboseBenzamidesChemokine CXCL1Chemotactic FactorsChromatography, AffinityEnzyme InhibitorsGene Expression Regulation, EnzymologicGrowth SubstancesHumansPoly(ADP-ribose) Polymerase InhibitorsPoly(ADP-ribose) PolymerasesPromoter Regions, GeneticRNA, MessengerTranscription, Genetic3-aminobenzamideAdenosine Diphosphate RiboseBenzamidesChemokine CXCL1Chemokines, CXCChemotactic FactorsCXCL1 protein, humanEnzyme InhibitorsGrowth SubstancesIntercellular Signaling Peptides and ProteinsPoly(ADP-ribose) Polymerase InhibitorsPoly(ADP-ribose) PolymerasesRNA, Messenger

Identifiers

PMID11112786
PMCPMC3369623
OpenAlexW2074757035

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.