Evidence map›Paper›PMID 11102525›Full record

ArticleMolecular biology of the cell2000

New components of a system for phosphate accumulation and polyphosphate metabolism in Saccharomyces cerevisiae revealed by genomic expression analysis.

N Ogawa, J DeRisi, P O Brown

Abstract read
In one paragraph

Article in Molecular biology of the cell, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 218 papers.

0numbers the graph read from it
0cells of the map it votes in
218citing papers in PubMed
8.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

218 citing papers in PubMed, 497 citations in OpenAlex.

  1. International journal of molecular sciences · 2026
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  17. Ppn2 Polyphosphatase Improves the Ability ofJournal of fungi (Basel, Switzerland) · 2024
    Article
  18. The Protein Scaffolding Functions of Polyphosphate.Journal of molecular biology · 2024
    Review
  19. Review
  20. Article

158 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

N OgawaDepartment of Biochemistry, Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, California 94305-5307, USA.
J DeRisi
P O Brown
Howard Hughes Medical Institute · USStanford University · USUniversity of California, San Francisco · US

Funding

FUNCTIONAL MAP OF THE YEAST GENOMER01HG000983 · NHGRI · STANFORD UNIVERSITY · PI BROWN, PATRICK O. · 1996 to 2001
$1.0M
NHGRI NIH HHS HG00983
6 · The paper itself

Abstract

The PHO regulatory pathway is involved in the acquisition of phosphate (P(i)) in the yeast Saccharomyces cerevisiae. When extracellular P(i) concentrations are low, several genes are transcriptionally induced by this pathway, which includes the Pho4 transcriptional activator, the Pho80-Pho85 cyclin-CDK pair, and the Pho81 CDK inhibitor. In an attempt to identify all the components regulated by this system, a whole-genome DNA microarray analysis was employed, and 22 PHO-regulated genes were identified. The promoter regions of 21 of these genes contained at least one copy of a sequence that matched the Pho4 recognition site. Eight of these genes, PHM1-PHM8, had no previously defined function in phosphate metabolism. The amino acid sequences of PHM1 (YFL004w), PHM2 (YPL019c), PHM3 (YJL012c), and PHM4 (YER072w) are 32-56% identical. The phm3 and phm4 single mutants and the phm1 phm2 double mutant were each severely deficient in accumulation of inorganic polyphosphate (polyP) and P(i). The phenotype of the phm5 mutant suggests that PHM5 (YDR452w) is essential for normal catabolism of polyP in the yeast vacuole. Taken together, the results reveal important new features of a genetic system that plays a critical role in P(i) acquisition and polyP metabolism in yeast.

Indexed as

Gene Expression ProfilingGene Expression Regulation, FungalGenome, FungalVacuolar Proton-Translocating ATPasesAcid Anhydride HydrolasesAmino Acid SequenceFungal ProteinsModels, BiologicalMutationOligonucleotide Array Sequence AnalysisPolyphosphatesProton-Translocating ATPasesSaccharomyces cerevisiaeSequence HomologyTrans-ActivatorsVacuolesAcid Anhydride HydrolasesendopolyphosphataseFungal ProteinsPolyphosphatesProton-Translocating ATPasesTrans-ActivatorsVacuolar Proton-Translocating ATPases

Identifiers

PMID11102525
PMCPMC15074
OpenAlexW2034162523

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.