Evidence map›Paper›PMID 11102353›Full record

ArticleGenetics2000

Genetic and physical interactions between factors involved in both cell cycle progression and pre-mRNA splicing in Saccharomyces cerevisiae.

S Ben-Yehuda, I Dix, C S Russell, M McGarvey, J D Beggs, M Kupiec

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Genetics, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 116 citations in OpenAlex.

  1. Review
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  6. Identification of transient intermediates during spliceosome activation by single molecule fluorescence microscopy.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  7. Article
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  9. Genome-wide comparison andFrontiers in genetics · 2022
    Article
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  14. Review
  15. Article
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9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

S Ben-YehudaDepartment of Molecular Microbiology and Biotechnology, Tel Aviv University, Ramat Aviv 69978, Israel.
I Dix
C S Russell
M McGarvey
J D Beggs
M Kupiec
University of Edinburgh · GBTel Aviv University · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The PRP17/CDC40 gene of Saccharomyces cerevisiae functions in two different cellular processes: pre-mRNA splicing and cell cycle progression. The Prp17/Cdc40 protein participates in the second step of the splicing reaction and, in addition, prp17/cdc40 mutant cells held at the restrictive temperature arrest in the G2 phase of the cell cycle. Here we describe the identification of nine genes that, when mutated, show synthetic lethality with the prp17/cdc40Delta allele. Six of these encode known splicing factors: Prp8p, Slu7p, Prp16p, Prp22p, Slt11p, and U2 snRNA. The other three, SYF1, SYF2, and SYF3, represent genes also involved in cell cycle progression and in pre-mRNA splicing. Syf1p and Syf3p are highly conserved proteins containing several copies of a repeated motif, which we term RTPR. This newly defined motif is shared by proteins involved in RNA processing and represents a subfamily of the known TPR (tetratricopeptide repeat) motif. Using two-hybrid interaction screens and biochemical analysis, we show that the SYF gene products interact with each other and with four other proteins: Isy1p, Cef1p, Prp22p, and Ntc20p. We discuss the role played by these proteins in splicing and cell cycle progression.

Indexed as

DNA-Binding ProteinsGenes, FungalRNA HelicasesSaccharomyces cerevisiae ProteinsAmino Acid MotifsAmino Acid SequenceAnimalsCaenorhabditis elegansCell CycleCell Cycle ProteinsDEAD-box RNA HelicasesFungal ProteinsG2 PhaseHumansMolecular Sequence DataRNA-Binding ProteinsCDC40 protein, S cerevisiaeCEF1 protein, S cerevisiaeCell Cycle ProteinsCLF1 protein, S cerevisiaeDEAD-box RNA HelicasesDNA-Binding ProteinsFungal ProteinsISY1 protein, S cerevisiaePRP22 protein, S cerevisiaeRNA-Binding ProteinsRNA, FungalRNA HelicasesRNA PrecursorsRNA, Small NuclearRNA Splicing FactorsSaccharomyces cerevisiae ProteinsSyf1 protein, S cerevisiaeU2 small nuclear RNA

Identifiers

PMID11102353
PMCPMC1461362
OpenAlexW2163510866

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.