ArticleJournal of biomolecular NMR2000
Sequence-specific NMR assignment of proteins by global fragment mapping with the program MAPPER.
Article in Journal of biomolecular NMR, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.
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Who cites it
33 citing papers in PubMed, 93 citations in OpenAlex.
- NMR Assignment through Linear Programming.Journal of global optimization : an international journal dealing with theoretical and computational aspects of seeking global optima and their applications in science, management and engineering · 2022Article
- Application of Dirichlet process mixture model to the identification of spin systems in protein NMR spectra.Journal of biomolecular NMR · 2018Article
- Median Modified Wiener Filter for nonlinear adaptive spatial denoising of protein NMR multidimensional spectra.Scientific reports · 2015Article
- An automated framework for NMR resonance assignment through simultaneous slice picking and spin system forming.Journal of biomolecular NMR · 2014Article
- Recent advances in computational methods for nuclear magnetic resonance data processing.Genomics, proteomics & bioinformatics · 2013Review
- FtsA forms actin-like protofilaments.The EMBO journal · 2012Article
- A simplified recipe for assigning amide NMR signals using combinatorial 14N amino acid inverse-labeling.Journal of structural and functional genomics · 2011Article
- NMR resonance assignments of thrombin reveal the conformational and dynamic effects of ligation.Proceedings of the National Academy of Sciences of the United States of America · 2010Article
- Engineering a two-helix bundle protein for folding studies.Protein engineering, design & selection : PEDS · 2010Article
- Automated structure determination from NMR spectra.European biophysics journal : EBJ · 2009Review
- Automated assignment of NMR chemical shifts using peak-particle dynamics simulation with the DYNASSIGN algorithm.Journal of biomolecular NMR · 2009Article
- APSY-NMR with proteins: practical aspects and backbone assignment.Journal of biomolecular NMR · 2008Article
- Graphical interpretation of Boolean operators for protein NMR assignments.Journal of biomolecular NMR · 2008Article
- The type III secretion chaperone SycE promotes a localized disorder-to-order transition in the natively unfolded effector YopE.The Journal of biological chemistry · 2008Article
- Contact replacement for NMR resonance assignment.Bioinformatics (Oxford, England) · 2008Article
- Automated sequence-specific protein NMR assignment using the memetic algorithm MATCH.Journal of biomolecular NMR · 2008Article
- KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies.Journal of biomolecular NMR · 2007Article
- A simple, RNA-mediated allosteric switch controls the pathway to formation of a T=3 viral capsid.Journal of molecular biology · 2007Article
- Solution structure of the N-domain of Wilson disease protein: distinct nucleotide-binding environment and effects of disease mutations.Proceedings of the National Academy of Sciences of the United States of America · 2006Article
- PASA--a program for automated protein NMR backbone signal assignment by pattern-filtering approach.Journal of biomolecular NMR · 2006Article
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Authors and funding
4 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
A new program, MAPPER, for semiautomatic sequence-specific NMR assignment in proteins is introduced. The program uses an input of short fragments of sequentially neighboring residues, which have been assembled based on sequential NMR connectivities and for which either the 13C(alpha) and 13C(beta) chemical shifts or data on the amino acid type from other sources are known. MAPPER then performs an exhaustive search for self-consistent simultaneous mappings of all these fragments onto the protein sequence. Compared to using only the individual mappings of the spectroscopically connected fragments, the global mapping adds a powerful new constraint, which results in resolving many otherwise intractable ambiguities. In an initial application, virtually complete sequence-specific assignments were obtained for a 110 kDa homooctameric protein, 7,8-dihydroneopterin aldolase from Staphylococcus aureus.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.