Evidence map›Paper›PMID 11095691›Full record

ArticleNucleic acids research2000

Essential regions of the tRNA primer required for HIV-1 infectivity.

Q Yu, C D Morrow

Open access · greenAbstract read
In one paragraph

Article in Nucleic acids research, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
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  5. Functional analysis of human tRNA isodecoders.Journal of molecular biology · 2010
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Q YuDepartment of Microbiology, University of Alabama at Birmingham, 701 South 19th Street, LHRB 619, Birmingham, AL 35294, USA.
C D Morrow
University of Alabama at Birmingham · US

Funding

Virology CoreP30AI027767 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI OLAF KUTSCH · 1988 to 2026
$84.1M
MOLECULAR ANALYSIS OF HIV1 REVERSE TRANSCRIPTIONR37AI034749 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI MORROW, CASEY D · 1999 to 2008
$2.5M
STRUCTURES OF HIV 1 INITIATION COMPLEX DOMAINS BY NMRP01GM056544 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI MORROW, CASEY D · 1997 to 2001
$1.7M
MOLECULAR ANALYSIS OF HIV-1 REVERSE TRANSCRIPTIONR01AI034749 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI MORROW, CASEY D · 1994 to 1998
–
NIAID NIH HHS AI-27767NIAID NIH HHS AI34749NIAID NIH HHS P30 AI027767NIAID NIH HHS R37 AI034749NIGMS NIH HHS GM56544
6 · The paper itself

Abstract

Human immunodeficiency virus (HIV), like all retroviruses, requires a cellular tRNA as a primer for initiation of reverse transcription. In a previous study, we demonstrated that an HIV-1 with a primer binding site complementary to yeast tRNA(Phe) (psHIV-Phe) was not infectious unless yeast tRNA(Phe) was supplied in trans. This unique in vivo complementation system has now been used to define the elements of the tRNA required for HIV-1 replication. Mutant tRNA(Phe) with deletions in TPsiC stem-loop, anticodon stem-loop or D stem-loop of the tRNA were generated and assessed for the capacity to rescue psHIV-Phe. Mutant tRNA(Phe) with disrupted TPsiC stem-loop did not rescue psHIV-Phe. In contrast, a mutant tRNA(Phe) without the D stem-loop was fully functional for the rescue. The tRNA anticodon stem-loop region was found to be important for efficient complementation. The results of our studies demonstrate for the first time the importance of specific structural and sequence elements of the tRNA primer for HIV-1 reverse transcription and define new targets for interruption of HIV-1 replication.

Indexed as

Base SequenceCell LineDNA, RecombinantGenetic Complementation TestHeLa CellsHIV-1HumansMolecular Sequence DataMutationNucleic Acid ConformationPlasmidsRNA, TransferRNA, Transfer, LysRNA, Transfer, PheRNA, ViralSaccharomyces cerevisiaeDNA, RecombinantRNA, TransferRNA, Transfer, LysRNA, Transfer, PheRNA, Viral

Identifiers

PMID11095691
PMCPMC115161
OpenAlexW2109170748

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.