Evidence map›Paper›PMID 11090134›Full record

ArticleGenes & development2000

Transgene integration into the same chromosome location can produce alleles that express at a predictable level, or alleles that are differentially silenced.

C D Day, E Lee, J Kobayashi, L D Holappa, H Albert, D W Ow

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed, 246 citations in OpenAlex.

  1. Article
  2. Review
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  4. A synthetic biology approach for the treatment of pollutants with microalgae.Frontiers in bioengineering and biotechnology · 2024
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  8. Target Lines forInternational journal of molecular sciences · 2022
    Article
  9. Split-Cre mediated deletion of DNA no longer needed after site-specific integration in rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  10. Field-EvolvedGenes · 2022
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Targeted DNA insertion in plants.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Review
  17. Article
  18. Article
  19. Article
  20. Article

27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

C D DayPlant Gene Expression Center, U.S. Department of Agriculture-Agricultural Research Service, Albany, California 94710, USA.
E Lee
J Kobayashi
L D Holappa
H Albert
D W Ow
Plant Gene Expression Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In an effort to control the variability of transgene expression in plants, we used Cre-lox mediated recombination to insert a gus reporter gene precisely and reproducibly into different target loci. Each integrant line chosen for analysis harbors a single copy of the transgene at the designated target site. At any given target site, nearly half of the insertions give a full spatial pattern of transgene expression. The absolute level of expression, however, showed target site dependency that varied up to 10-fold. This substantiates the view that the chromosome position can affect the level of gene expression. An unexpected finding was that nearly half of the insertions at any given target site failed to give a full spatial pattern of transgene expression. These partial patterns of expression appear to be attributable to gene silencing, as low gus expression correlates with DNA methylation and low transcription. The methylation is specific for the newly integrated DNA. Methylation changes are not found outside of the newly inserted DNA. Both the full and the partial expression states are meiotically heritable. The silencing of the introduced transgenes may be a stochastic event that occurs during transformation.

Indexed as

Gene SilencingGenes, PlantTransgenesAllelesDNA MethylationDNA, PlantGene ExpressionGenes, ReporterGenome, PlantGlucuronidaseMeiosisModels, GeneticMutagenesis, InsertionalNicotianaPlants, ToxicRecombination, GeneticDNA, PlantGlucuronidaseRNA, MessengerRNA, Plant

Identifiers

PMID11090134
PMCPMC317066
OpenAlexW2042963714

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.