Evidence map›Paper›PMID 11080143›Full record

ArticleThe EMBO journal2000

Crystal structure of the Xrcc4 DNA repair protein and implications for end joining.

M S Junop, M Modesti, A Guarné, R Ghirlando, M Gellert, W Yang

Open access · greenAbstract readComparative Study
In one paragraph

Article in The EMBO journal, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed, 183 citations in OpenAlex.

  1. Article
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  5. When DNA-damage responses meet innate and adaptive immunity.Cellular and molecular life sciences : CMLS · 2024
    Review
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  15. Biomolecular NMR assignments · 2021
    Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

M S JunopLaboratory of Molecular Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892, USA.
M Modesti
A Guarné
R Ghirlando
M Gellert
W Yang
National Institute of Diabetes and Digestive and Kidney Diseases · US

Funding

Structural and mechanistic studies Of DNA mismatch repairZIADK036119 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI YANG, WEI · 2009 to 2025
$6.6M
Structural Study Of DNA Recombination, Repair, ReplicatZ01DK036119 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI YANG, WEI · 1996 to 2008
$664k
STUDIES OF IMMUNOGLOBULIN GENE REARRANGEMENTZ01DK033001 · NIDDK · DIABETES, DIGESTIVE, KIDNEY DISEASES · PI GELLERT, MARTIN F. · 1986 to 2006
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6 · The paper itself

Abstract

XRCC4 is essential for carrying out non-homologous DNA end joining (NHEJ) in all eukaryotes and, in particular, V(D)J recombination in vertebrates. Xrcc4 protein forms a complex with DNA ligase IV that rejoins two DNA ends in the last step of V(D)J recombination and NHEJ to repair double strand breaks. XRCC4-defective cells are extremely sensitive to ionizing radiation, and disruption of the XRCC4 gene results in embryonic lethality in mice. Here we report the crystal structure of a functional fragment of Xrcc4 at 2.7 A resolution. Xrcc4 protein forms a strikingly elongated dumb-bell-like tetramer. Each of the N-terminal globular head domains consists of a beta-sandwich and a potentially DNA-binding helix- turn-helix motif. The C-terminal stalk comprising a single alpha-helix >120 A in length is partly incorporated into a four-helix bundle in the Xrcc4 tetramer and partly involved in interacting with ligase IV. The Xrcc4 structure suggests a possible mode of coupling ligase IV association with DNA binding for effective ligation of DNA ends.

Indexed as

DNA RepairAmino Acid SequenceAnimalsBacterial ProteinsBinding SitesCell Cycle ProteinsCrystallizationCrystallography, X-RayDimerizationDNADNA-Binding ProteinsDNA Ligase ATPDNA LigasesHumansMacromolecular SubstancesMiceBacterial ProteinsCell Cycle ProteinsDNADNA-Binding ProteinsDNA Ligase ATPDNA LigasesDNL4 protein, S cerevisiaeLIG4 protein, humanMacromolecular SubstancesSMC protein, BacteriaXRCC4 protein, human

Identifiers

PMID11080143
PMCPMC305814
OpenAlexW2071206740

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.