ArticleGenome research2000
Contigs built with fingerprints, markers, and FPC V4.7.
Article in Genome research, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 160 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
160 citing papers in PubMed, 323 citations in OpenAlex.
- Article
- Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data.Genome biology · 2018Article
- Features of the organization of bread wheat chromosome 5BS based on physical mapping.BMC genomics · 2018Article
- Sub genome anchored physical frameworks of the allotetraploid Upland cotton (Gossypium hirsutum L.) genome, and an approach toward reference-grade assemblies of polyploids.Scientific reports · 2017Article
- Young inversion with multiple linked QTLs under selection in a hybrid zone.Nature ecology & evolution · 2017Article
- BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes.Plant biotechnology journal · 2016Article
- An efficient approach to BAC based assembly of complex genomes.Plant methods · 2016Article
- High Quality Maize Centromere 10 Sequence Reveals Evidence of Frequent Recombination Events.Frontiers in plant science · 2016Article
- Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement.Scientific reports · 2015Article
- Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome.The Plant journal : for cell and molecular biology · 2015Article
- High-throughput physical map anchoring via BAC-pool sequencing.BMC plant biology · 2015Article
- Global genomic diversity of Oryza sativa varieties revealed by comparative physical mapping.Genetics · 2014Article
- The barley Frost resistance-H2 locus.Functional & integrative genomics · 2014Article
- PROTEIN DISULFIDE ISOMERASE LIKE 5-1 is a susceptibility factor to plant viruses.Proceedings of the National Academy of Sciences of the United States of America · 2014Article
- A sequence-ready physical map of barley anchored genetically by two million single-nucleotide polymorphisms.Plant physiology · 2014Article
- Article
- The physical map of wheat chromosome 1BS provides insights into its gene space organization and evolution.Genome biology · 2013Article
- A BAC based physical map and genome survey of the rice false smut fungus Villosiclava virens.BMC genomics · 2013Article
- A high density physical map of chromosome 1BL supports evolutionary studies, map-based cloning and sequencing in wheat.Genome biology · 2013Article
- A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor.Proceedings of the National Academy of Sciences of the United States of America · 2013Article
100 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors at 1 institution in 2 countries.
Funding
Abstract
Contigs have been assembled, and over 2800 clones selected for sequencing for human chromosomes 9, 10 and 13. Using the FPC (FingerPrinted Contig) software, the contigs are assembled with markers and complete digest fingerprints, and the contigs are ordered and localised by a global framework. Publicly available resources have been used, such as, the 1998 International Gene Map for the framework and the GSC Human BAC fingerprint database for the majority of the fingerprints. Additional markers and fingerprints are generated in-house to supplement this data. To support the scale up of building maps, FPC V4.7 has been extended to use markers with the fingerprints for assembly of contigs, new clones and markers can be automatically added to existing contigs, and poorly assembled contigs are marked accordingly. To test the automatic assembly, a simulated complete digest of 110 Mb of concatenated human sequence was used to create datasets with varying coverage, length of clones, and types of error. When no error was introduced and a tolerance of 7 was used in assembly, the largest contig with no false positive overlaps has 9534 clones with 37 out-of-order clones, that is, the starting coordinates of adjacent clones are in the wrong order. This paper describes the new features in FPC, the scenario for building the maps of chromosomes 9, 10 and 13, and the results from the simulation.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.