Evidence map›Paper›PMID 11069303›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2000

A CBF5 mutation that disrupts nucleolar localization of early tRNA biosynthesis in yeast also suppresses tRNA gene-mediated transcriptional silencing.

A Kendall, M W Hull, E Bertrand, P D Good, R H Singer, D R Engelke

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 68 citations in OpenAlex.

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  17. Mod5 protein binds to tRNA gene complexes and affects local transcriptional silencing.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  18. The hierarchy of the 3D genome.Molecular cell · 2013
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

A KendallDepartment of Biological Chemistry and Program in Cellular and Molecular Biology, University of Michigan, Ann Arbor, MI 48109-0606, USA.
M W Hull
E Bertrand
P D Good
R H Singer
D R Engelke
Institut de Génétique Moléculaire de Montpellier · FRAlbert Einstein College of Medicine · USState University of New York · US

Funding

CELLULAR AND MOLECULAR BIOLOGY AT MICHIGANT32GM007315 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PUTHENVEEDU, MANOJKUMAR A · 1985 to 2021
$12.8M
RNA TRANSPORT AND LOCALIZATION IN YEAST IN SITUR01GM057071 · NIGMS · YESHIVA UNIVERSITY · PI SINGER, ROBERT H · 1998 to 2019
$5.7M
EUKARYOTIC TRNA MATURATIONR01GM034869 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ENGELKE, DAVID R · 1985 to 2006
$2.3M
REGULATORY INTERACTIONS BETWEEN EUKARYOTIC PROMOTERSR21GM052907 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ENGELKE, DAVID R · 1996 to 1997
–
NIGMS NIH HHS GM34869NIGMS NIH HHS GM52907NIGMS NIH HHS GM54887NIGMS NIH HHS R01 GM034869NIGMS NIH HHS R01 GM057071NIGMS NIH HHS T32 GM007315
6 · The paper itself

Abstract

In the budding yeast, Saccharomyces cerevisiae, actively transcribed tRNA genes can negatively regulate adjacent RNA polymerase II (pol II)-transcribed promoters. This tRNA gene-mediated silencing is independent of the orientation of the tRNA gene and does not require direct, steric interference with the binding of either upstream pol II factors or the pol II holoenzyme. A mutant was isolated in which this form of silencing is suppressed. The responsible point mutation affects expression of the Cbf5 protein, a small nucleolar ribonucleoprotein protein required for correct processing of rRNA. Because some early steps in the S. cerevisiae pre-tRNA biosynthetic pathway are nucleolar, we examined whether the CBF5 mutation might affect this localization. Nucleoli were slightly fragmented, and the pre-tRNAs went from their normal, mostly nucleolar location to being dispersed in the nucleoplasm. A possible mechanism for tRNA gene-mediated silencing is suggested in which subnuclear localization of tRNA genes antagonizes transcription of nearby genes by pol II.

Indexed as

Gene SilencingPoint MutationRibonucleoproteins, Small NuclearSaccharomyces cerevisiae ProteinsTranscription, GeneticCell NucleolusCloning, MolecularFungal ProteinsGene Expression Regulation, FungalHydro-LyasesMicrotubule-Associated ProteinsPromoter Regions, GeneticRNA-Binding ProteinsRNA, FungalRNA Polymerase IIRNA PrecursorsCBF5 protein, S cerevisiaeFungal ProteinsHydro-Lyasesimidazoleglycerolphosphate dehydrataseMicrotubule-Associated ProteinsRibonucleoproteins, Small NuclearRNA-Binding ProteinsRNA, FungalRNA Polymerase IIRNA PrecursorsRNA, TransferSaccharomyces cerevisiae Proteins

Identifiers

PMID11069303
PMCPMC27186
OpenAlexW2131037303

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.