ArticlePlant molecular biology2000
Expression analysis of ESts derived from the inner bark of Cryptomeria japonica.
Article in Plant molecular biology, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed, 72 citations in OpenAlex.
- A protocol forPlant biotechnology (Tokyo, Japan) · 2020Article
- Local and systemic changes in expression of resistance genes, NB-LRR genes and their putative microRNAs in Norway spruce after wounding and inoculation with the pathogen Ceratocystis polonica.BMC plant biology · 2012Article
- Analysis of 2,297 expressed sequence tags (ESTs) from a cDNA library of flax (Linum ustitatissimum L.) bark tissue.Molecular biology reports · 2012Article
- A second generation framework for the analysis of microsatellites in expressed sequence tags and the development of EST-SSR markers for a conifer, Cryptomeria japonica.BMC genomics · 2012Article
- Article
- Characterization of the genome of bald cypress.BMC genomics · 2011Article
- A conifer genomics resource of 200,000 spruce (Picea spp.) ESTs and 6,464 high-quality, sequence-finished full-length cDNAs for Sitka spruce (Picea sitchensis).BMC genomics · 2008Article
- Characterization of expressed sequence tags from a full-length enriched cDNA library of Cryptomeria japonica male strobili.BMC genomics · 2008Article
- Genome scan to detect genetic structure and adaptive genes of natural populations of Cryptomeria japonica.Genetics · 2007Article
- Comparative analysis of expressed sequence tags of conifers and angiosperms reveals sequences specifically conserved in conifers.Plant molecular biology · 2005Article
- Article
- Evaluation of cleaved amplified polymorphic sequence markers for Chamaecyparis obtusa based on expressed sequence tag information from Cryptomeria japonica.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2004Article
- Comparative analysis of 5,211 leaf ESTs of wild rice (Oryza minuta).Plant cell reports · 2004Article
- A consensus linkage map for sugi (Cryptomeria japonica) from two pedigrees, based on microsatellites and expressed sequence tags.Genetics · 2003Article
- Article
Corrections and comments
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Authors and funding
6 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
To assist genetic research into Cryptomeria japonica, which is one of the most important forest tree species in Japan, expressed sequence tag (EST) analysis was carried out. The cDNA clones were isolated from a library derived from inner bark tissues. Partial sequences were obtained from 2231 clones, representing 1398 unique transcripts. Putative functions were assigned to 1583 clones, which represented 882 unique transcripts, by a Blast algorithm. Homology analysis suggested that ESTs related to cell wall formation represented about 3% of the clones. Transcripts of plant stress response genes were also abundant in the inner bark library, especially genes involved in wounding and drought responses. This indicates that the stress response systems of this tree species are similar to those of other plants, and that these systems are highly conserved among plant species. The remaining 648 clones, which represented 516 unique transcripts, did not show any significant homology to known sequences in the databases searched: these are expected to represent genes specific to Cryptomeria and, possibly, to related species.
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