Evidence map›Paper›PMID 11050178›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2000

Genetic mosaic analysis based on Cre recombinase and navigated laser capture microdissection.

M H Wong, J R Saam, T S Stappenbeck, C H Rexer, J I Gordon

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 119 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Advancing Intestinal Organoid Technology Toward Regenerative Medicine.Cellular and molecular gastroenterology and hepatology · 2018
    Review
  7. Oncotarget · 2017
    Article
  8. OncogenicGenes & development · 2017
    Article
  9. Global protein expression analysis of molecular markers of DS-1-47, a component of implantation-promoting traditional chinese medicine.Journal of Huazhong University of Science and Technology. Medical sciences = Hua zhong ke ji da xue xue bao. Yi xue Ying De wen ban = Huazhong keji daxue xuebao. Yixue Yingdewen ban · 2016
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Update on small intestinal stem cells.World journal of gastroenterology · 2013
    Review
  16. Laser capture microdissection for protein and NanoString RNA analysis.Methods in molecular biology (Clifton, N.J.) · 2013
    Article
  17. Review
  18. Context-dependent differentiation of multipotential keratin 14-expressing tracheal basal cells.American journal of respiratory cell and molecular biology · 2011
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

M H WongDepartment of Molecular Biology and Pharmacology, Washington University School of Medicine, St. Louis, MO 63110, USA.
J R Saam
T S Stappenbeck
C H Rexer
J I Gordon
Washington University in St. Louis · US

Funding

REGULATION OF GENE EXPRESSION - SMALL INTESTINER01DK030292 · NIDDK · WASHINGTON UNIVERSITY · PI JEFFREY I GORDON, ANDREI L OSTERMAN · 1986 to 2026
$6.5M
REGULATION OF GENE EXPRESSION IN THE SMALL INTESTINER37DK030292 · NIDDK · WASHINGTON UNIVERSITY · PI GORDON, JEFFREY I · 1993 to 2015
$4.0M
SYSTEM FOR INDUCIBLE GENE KNOCKOUTS IN MOUSE COLONF32DK009724 · NIDDK · WASHINGTON UNIVERSITY · PI SAAM, JENNIFER R · 1997 to 1998
–
NIDDK NIH HHS DK09724NIDDK NIH HHS DK30292NIDDK NIH HHS F32 DK009724NIDDK NIH HHS R01 DK030292NIDDK NIH HHS R37 DK030292
6 · The paper itself

Abstract

Defining molecular interactions that occur at the interface between "normal" and "abnormal" cell populations represents an important but often underexplored aspect of the pathogenesis of diseases with focal origins. Here, we illustrate an approach for conducting such analyses based on mosaic patterns of Cre recombinase expression in the adult mouse intestinal epithelium. Transgenic mice were generated that express Cre in the stem cell niche of crypts located in specified regions of their intestine. Some of these mice were engineered to allow for doxycycline-inducible Cre expression. Recombination in all pedigrees was mosaic: Cre-expressing crypts that supported recombination in all of their active multipotent stem cells were located adjacent to "control" crypts that did not express Cre at detectable levels. Cre-mediated recombination of a floxed LacZ reporter provided direct evidence that adult small-intestinal crypts contain more than one active multipotent stem cell, and that these cells can be retained in both small-intestinal and colonic crypts for at least 80 d. A method was developed to recover epithelial cells from crypts with or without recombination for subsequent gene expression profiling. Stained sections of intestine were used to create electronic image templates to guide laser capture microdissection (LCM) of adjacent frozen sections. This navigated form of LCM overcomes problems with mRNA degradation encountered when cells are marked directly by immunohistochemical methods. Combining Cre-engineered genetic mosaic mice with navigated-LCM will allow biology and pathobiology to be explored at the junction between normal and perturbed cellular cohorts.

Indexed as

Viral ProteinsAnimalsGene ExpressionHumansIleumIntegrasesIntestinal MucosaLac OperonLasersMiceMosaicismPolymerase Chain ReactionRecombination, GeneticReverse Transcriptase Polymerase Chain ReactionRNAStem CellsCre recombinaseIntegrasesRNAViral Proteins

Identifiers

PMID11050178
PMCPMC18810
OpenAlexW2146589920

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.