Evidence map›Paper›PMID 11042144›Full record

ArticleGenome research2000

HEAT repeats associated with condensins, cohesins, and other complexes involved in chromosome-related functions.

A F Neuwald, T Hirano

Open access · hybridAbstract read
In one paragraph

Article in Genome research, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 134 papers.

0numbers the graph read from it
0cells of the map it votes in
134citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

134 citing papers in PubMed, 277 citations in OpenAlex.

  1. Review
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  17. Review
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  19. Article
  20. PDS5A and PDS5B in Cohesin Function and Human Disease.International journal of molecular sciences · 2021
    Review

74 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

A F NeuwaldCold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA.neuwald@cshl.org
T Hirano
Cold Spring Harbor Laboratory · US

Funding

BIOCHEMICAL ANALYSIS OF MITOTIC CHROMOSOME CONDENSATIONR01GM053926 · NIGMS · COLD SPRING HARBOR LABORATORY · PI HIRANO, TATSUYA · 1996 to 2006
$2.6M
ADVANCED SEQUENCE BASED PREDICTION OF PROTEIN FUNCTIONR01LM006747 · NLM · J. CRAIG VENTER INSTITUTE, INC. · PI NEUWALD, ANDREW F · 1998 to 2005
$2.3M
NIGMS NIH HHS GM53926NIGMS NIH HHS R01 GM053926NLM NIH HHS LM06747NLM NIH HHS R01 LM006747
6 · The paper itself

Abstract

HEAT repeats correspond to tandemly arranged curlicue-like structures that appear to serve as flexible scaffolding on which other components can assemble. Using sensitive sequence analysis techniques we detected HEAT repeats in various chromosome-associated proteins, including four families of proteins associated with condensins and cohesins, which are nuclear complexes that contain structural maintenance of chromosome (SMC) proteins. Among the proteins detected were the XCAP-D2 and XCAP-G subunits of the Xenopus laevis 13S condensin complex, the Aspergillus BimD and Sordaria macrospora Spo76p proteins, the budding yeast Scc2p protein, and the related Drosophila transcriptional activator Nipped-B. Clathrin adaptor and COP-I coatomer subunits, which function in vesicle coat assembly and were previously noted to share weak sequence similarity to condensin subunits, also contain HEAT repeats. HEAT repeats were also found in the TBP-associated TIP120 protein, a global enhancer of transcription, and in the budding yeast Mot1p protein, which is a member of the SWI2/SNF2 family. SWI2/SNF2 proteins, some of which are helicases, perform diverse roles in transcription control, DNA repair, and chromosome segregation and form chromatin-remodeling complexes. HEAT repeats also were found in dis1-TOG family and cofactor D family microtubule-associated proteins, which, owing to their roles in microtubule dynamics, perform functions related to mitotic progression and chromosome segregation. Hence, our analysis predicts structural features of these proteins and suggests that HEAT repeats may play important roles in chromosome dynamics.

Indexed as

Repetitive Sequences, Amino AcidAmino Acid SequenceAnimalsCell Cycle ProteinsChromosomal Proteins, Non-HistoneCohesinsDNA-Binding ProteinsFungal ProteinsHumansMacromolecular SubstancesMolecular Sequence DataNuclear ProteinsSequence AlignmentSequence Homology, Amino AcidTranscription FactorsCell Cycle ProteinsChromosomal Proteins, Non-HistoneCohesinsDNA-Binding ProteinsFungal ProteinsMacromolecular SubstancesNuclear ProteinsTranscription Factors

Identifiers

PMID11042144
PMCPMC310966
OpenAlexW2120527610

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.