Evidence map›Paper›PMID 11027297›Full record

ArticleMolecular and cellular biology2000

Participation of the C-terminal domain of RNA polymerase II in exon definition during pre-mRNA splicing.

C Zeng, S M Berget

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 76 citations in OpenAlex.

  1. Co-transcriptional mRNP formation is coordinated within a molecular mRNP packaging station in S. cerevisiae.BioEssays : news and reviews in molecular, cellular and developmental biology · 2015
    Review
  2. Review
  3. Review
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  5. Article
  6. Updating the CTD Story: From Tail to Epic.Genetics research international · 2011
    Article
  7. Article
  8. Article
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  10. Rates of in situ transcription and splicing in large human genes.Nature structural & molecular biology · 2009
    Article
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  12. Article
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  15. Article
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  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

C ZengVerna and Mars McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, Texas 77030, USA.
S M Berget
Baylor College of Medicine · US

Funding

PROCESSING OF PREMESSENGER RNAR01GM038526 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI BERGET, SUSAN M · 1988 to 2005
$2.7M
NIGMS NIH HHS R01 GM038526NIGMS NIH HHS R01GM38526
6 · The paper itself

Abstract

Interaction between transcription and pre-mRNA processing via binding of polymerase II (Pol II) to factors involved in capping, splicing, and polyadenylation has recently been demonstrated. The C-terminal domain (CTD), a highly phosphorylated repeat sequence of the largest subunit of Pol II, has been implicated in this interaction because deletion of this domain affects downstream RNA processing events and because it is the binding site for numerous processing factors. Here we show that recombinant CTD, free of other components of Pol II, activated in vitro splicing and assembly of the spliceosome in nuclear extracts if, and only if, the assayed precursor RNA was recognized via exon definition, i.e., if the substrates contained complete exons with both 3' and 5' splice sites. Furthermore, depletion of intact Pol II inactivated splicing of this set of precursor RNAs and addition of recombinant CTD restored activity. The added recombinant CTD was quickly hyper- and hypophosphorylated in extract, became associated with the precursor RNA, and stimulated the association of U1 snRNPs but not ASF/SF2 with substrate RNA. These observations suggest that the mode of interaction between the CTD and splicing factors is integrally tied to exon definition and the mechanism whereby distal exons can be recognized and brought into juxtaposition during assembly of the spliceosome.

Indexed as

RNA SplicingAnimalsCell NucleusExonsGlutathione TransferaseIntronsMiceModels, GeneticPhosphorylationPlasmidsPrecipitin TestsProtein Structure, TertiaryRecombinant ProteinsRNA Polymerase IIRNA PrecursorsSpliceosomesGlutathione TransferaseRecombinant ProteinsRNA Polymerase IIRNA Precursors

Identifiers

PMID11027297
PMCPMC86437
OpenAlexW2131793556

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.