Evidence map›Paper›PMID 11027286›Full record

ArticleMolecular and cellular biology2000

Mechanism of promoter melting by the xeroderma pigmentosum complementation group B helicase of transcription factor IIH revealed by protein-DNA photo-cross-linking.

M Douziech, F Coin, J M Chipoulet, Y Arai, Y Ohkuma, J M Egly, B Coulombe

Abstract read
In one paragraph

Article in Molecular and cellular biology, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Structural basis of transcription initiation by RNA polymerase II.Nature reviews. Molecular cell biology · 2015
    Review
  5. Article
  6. Article
  7. Article
  8. TFIIH: when transcription met DNA repair.Nature reviews. Molecular cell biology · 2012
    Review
  9. Subunit architecture of general transcription factor TFIIH.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Structural characterization of human general transcription factor TFIIF in solution.Protein science : a publication of the Protein Society · 2008
    Article
  16. Article
  17. Article
  18. Review
  19. Functional dissection of the catalytic mechanism of mammalian RNA polymerase II.Biochemistry and cell biology = Biochimie et biologie cellulaire · 2005
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

M DouziechDépartement de Biologie, Faculté des Sciences, Université de Sherbrooke, Sherbrooke, Québec J1K 2R1, Canada.
F Coin
J M Chipoulet
Y Arai
Y Ohkuma
J M Egly
B Coulombe

Funding

CIHR 14309-1
6 · The paper itself

Abstract

The p89/xeroderma pigmentosum complementation group B (XPB) ATPase-helicase of transcription factor IIH (TFIIH) is essential for promoter melting prior to transcription initiation by RNA polymerase II (RNAPII). By studying the topological organization of the initiation complex using site-specific protein-DNA photo-cross-linking, we have shown that p89/XPB makes promoter contacts both upstream and downstream of the initiation site. The upstream contact, which is in the region where promoter melting occurs (positions -9 to +2), requires tight DNA wrapping around RNAPII. The addition of hydrolyzable ATP tethers the template strand at positions -5 and +1 to RNAPII subunits. A mutation in p89/XPB found in a xeroderma pigmentosum patient impairs the ability of TFIIH to associate correctly with the complex and thereby melt promoter DNA. A model for open complex formation is proposed.

Indexed as

Promoter Regions, GeneticTranscription Factors, TFIITranscription, GeneticAdenosine TriphosphateBase SequenceBlotting, WesternCross-Linking ReagentsDNAGene DeletionHeLa CellsHumansHydrolysisModels, BiologicalMolecular Sequence DataMutagenesis, Site-DirectedPrecipitin TestsAdenosine TriphosphateCross-Linking ReagentsDNAProteinsRecombinant ProteinsTranscription FactorsTranscription Factors, TFIITranscription Factor TFIIH

Identifiers

PMID11027286
PMCPMC86426

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.