Evidence map›Paper›PMID 11024175›Full record

ArticleNucleic acids research2000

Structure of RsrI methyltransferase, a member of the N6-adenine beta class of DNA methyltransferases.

R D Scavetta, C B Thomas, M A Walsh, S Szegedi, A Joachimiak, R I Gumport, M E Churchill

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Nucleic acids research, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 86 citations in OpenAlex.

  1. Article
  2. Structures and mechanisms of the RNA mActa biochimica et biophysica Sinica · 2024
    Review
  3. bioRxiv : the preprint server for biology · 2024
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  4. Article
  5. Structural insights into DNA NCell discovery · 2023
    Article
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  7. Article
  8. Review
  9. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

R D ScavettaDepartment of Pharmacology, University of Colorado Health Sciences Center, 4200 East Ninth Avenue, Denver, CO 80262, USA.
C B Thomas
M A Walsh
S Szegedi
A Joachimiak
R I Gumport
M E Churchill
University of Colorado Health · US

Funding

X-RAY STRUCTURE OF RIFM PROTEIN FROM THE BIOSYNTHESIS PATHWAY OF THE ANSAMYCIN AP41RR012408 · NCRR · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI ORVILLE, ALLEN M · 1998 to 2011
$32.2M
X-RAY CRYSTALLOGRAPHY OF MACROMOLECULESR01GM053163 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI MINOR, WLADEK, OTWINOWSKI, ZBYSZEK · 1996 to 2014
$6.3M
STRUCTURAL STUDIES OF CHROMOSOMAL PROTEIN/DNA COMPLEXESR01GM059456 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI CHURCHILL, MAIR E · 1998 to 2002
$468k
T4 LIGASER01GM025621 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI GUMPORT, RICHARD I · 1985 to 1996
–
NCRR NIH HHS P41 RR012408NCRR NIH HHS RR12408-01A1NIGMS NIH HHS GM 25621NIGMS NIH HHS GM-53163NIGMS NIH HHS R01 GM053163NIGMS NIH HHS R01 GM059456
6 · The paper itself

Abstract

DNA methylation is important in cellular, developmental and disease processes, as well as in bacterial restriction-modification systems. Methylation of DNA at the amino groups of cytosine and adenine is a common mode of protection against restriction endonucleases afforded by the bacterial methyltransferases. The first structure of an N:6-adenine methyltransferase belonging to the beta class of bacterial methyltransferases is described here. The structure of M. RSR:I from Rhodobacter sphaeroides, which methylates the second adenine of the GAATTC sequence, was determined to 1.75 A resolution using X-ray crystallography. Like other methyltransferases, the enzyme contains the methylase fold and has well-defined substrate binding pockets. The catalytic core most closely resembles the PVU:II methyltransferase, a cytosine amino methyltransferase of the same beta group. The larger nucleotide binding pocket observed in M. RSR:I is expected because it methylates adenine. However, the most striking difference between the RSR:I methyltransferase and the other bacterial enzymes is the structure of the putative DNA target recognition domain, which is formed in part by two helices on an extended arm of the protein on the face of the enzyme opposite the active site. This observation suggests that a dramatic conformational change or oligomerization may take place during DNA binding and methylation.

Indexed as

AdenineAmino Acid SequenceBase SequenceBinding SitesCatalysisCatalytic DomainCrystallography, X-RayDNADNA-Binding ProteinsDNA-Cytosine MethylasesDNA MethylationHydrogen BondingModels, MolecularMolecular Sequence DataNucleotidesProtein BindingAdenineDNADNA-Binding ProteinsDNA-Cytosine MethylasesDNA modification methylase EcoRIDNA modification methylase PvuIINucleotidesS-AdenosylmethionineSite-Specific DNA-Methyltransferase (Adenine-Specific)

Identifiers

PMID11024175
PMCPMC110776
OpenAlexW2100394396

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.