Evidence map›Paper›PMID 11003646›Full record

ArticleMolecular and cellular biology2000

Increased rates of genomic deletions generated by mutations in the yeast gene encoding DNA polymerase delta or by decreases in the cellular levels of DNA polymerase delta.

R J Kokoska, L Stefanovic, J DeMai, T D Petes

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 1 synthesis or guideline pooled it, 87 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Review
  5. Cancers · 2023
    Article
  6. Article
  7. Unraveling the impact of a germline heterozygousFrontiers in molecular biosciences · 2023
    Article
  8. Article
  9. Global genomic instability caused by reduced expression of DNA polymerase ε in yeast.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  10. Rtt105 promotes high-fidelity DNA replication and repair by regulating the single-stranded DNA-binding factor RPA.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  11. Article
  12. Review
  13. Article
  14. Analysis of APOBEC-induced mutations in yeast strains with low levels of replicative DNA polymerases.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  15. Article
  16. Article
  17. Review
  18. GC content elevates mutation and recombination rates in the yeastProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  19. Review
  20. Stalled replication forks generate a distinct mutational signature in yeast.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

R J KokoskaDepartment of Biology, Curriculum in Genetics and Molecular Biology, University of North Carolina, Chapel Hill, North Carolina 27599-3280, USA.
L Stefanovic
J DeMai
T D Petes
University of North Carolina at Chapel Hill · US

Funding

INSTABILITY OF SIMPLE REPETITIVE DNA SEQUENCES IN YEASTR01GM052319 · NIGMS · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI PETES, THOMAS · 1995 to 2015
$4.9M
YEAST DNA REPLICATION MUTANTS AND GENOME STABILITYF32GM017879 · NIGMS · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI KOKOSKA, ROBERT J · 1995 to 1998
–
NIGMS NIH HHS F32 GM017879NIGMS NIH HHS GM17879NIGMS NIH HHS GM52319NIGMS NIH HHS R01 GM052319
6 · The paper itself

Abstract

In Saccharomyces cerevisiae, POL3 encodes the catalytic subunit of DNA polymerase delta. While yeast POL3 mutant strains that lack the proofreading exonuclease activity of the polymerase have a strong mutator phenotype, little is known regarding the role of other Pol3p domains in mutation avoidance. We identified a number of pol3 mutations in regions outside of the exonuclease domain that have a mutator phenotype, substantially elevating the frequency of deletions. These deletions appear to reflect an increased frequency of DNA polymerase slippage. In addition, we demonstrate that reduction in the level of wild-type DNA polymerase results in a similar mutator phenotype. Lowered levels of DNA polymerase also result in increased sensitivity to the DNA-damaging agent methyl methane sulfonate. We conclude that both the quantity and the quality of DNA polymerase delta is important in ensuring genome stability.

Indexed as

Gene DeletionMutagenesisSaccharomyces cerevisiae ProteinsDinucleotide RepeatsDNA-Binding ProteinsDNA Polymerase IIIDNA RepairFungal ProteinsGenes, FungalKineticsMethyl MethanesulfonateMutation, MissensePhenotypeRad52 DNA Repair and Recombination ProteinRecombination, GeneticSaccharomyces cerevisiaeDNA-Binding ProteinsDNA Polymerase IIIFungal ProteinsMethyl MethanesulfonatePOL3 protein, S cerevisiaeRad52 DNA Repair and Recombination ProteinRAD52 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID11003646
PMCPMC86302
OpenAlexW1984680959

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.