Evidence map›Paper›PMID 10990465›Full record

ArticleThe EMBO journal2000

An alternative protein splicing mechanism for inteins lacking an N-terminal nucleophile.

M W Southworth, J Benner, F B Perler

Open access · greenAbstract read
In one paragraph

Article in The EMBO journal, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 97 citations in OpenAlex.

  1. Massive intein content inProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  2. Calcimycin InhibitsACS infectious diseases · 2022
    Article
  3. Article
  4. Protein Splicing of Inteins: A Powerful Tool in Synthetic Biology.Frontiers in bioengineering and biotechnology · 2022
    Review
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Biotechnological Applications of Protein Splicing.Current protein & peptide science · 2019
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Thiol-based redox switches.Biochimica et biophysica acta · 2014
    Review
  17. Review
  18. Protein splicing: how inteins escape from precursor proteins.The Journal of biological chemistry · 2014
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

M W SouthworthNew England BioLabs, 32 Tozer Road, Beverly, MA 01915, USA
J Benner
F B Perler
New England Biolabs (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Variations in the intein-mediated protein splicing mechanism are becoming more apparent as polymorphisms in conserved catalytic residues are identified. The conserved Ser or Cys at the intein N-terminus and the conserved intein penultimate His are absent in the KlbA family of inteins. These inteins were predicted to be inactive, since an N-terminal Ala cannot perform the initial reaction of the standard protein splicing pathway to yield the requisite N-terminal splice junction (thio)ester. Despite the presence of an N-terminal Ala and a penultimate Ser, the KlbA inteins splice efficiently using an alternative protein splicing mechanism. In this non-canonical pathway, the C-extein nucleophile attacks a peptide bond at the N-terminal splice junction rather than a (thio)ester bond, alleviating the need to form the initial (thio)ester at the N-terminal splice junction. The remainder of the two pathways is the same: branch resolution by Asn cyclization is followed by an acyl rearrangement to form a native peptide bond between the ligated exteins.

Indexed as

Alternative SplicingBacterial ProteinsProtein Processing, Post-TranslationalAlanineCarrier ProteinsCatalysisCell LineCloning, MolecularCysteineMethanococcusModels, GeneticMutagenesis, Site-DirectedMutationPolymorphism, GeneticRecombinant Fusion ProteinsSerineAlanineBacterial ProteinsCarrier ProteinsCysteineklbA protein, Streptomyces lividansRecombinant Fusion ProteinsSerine

Identifiers

PMID10990465
PMCPMC314217
OpenAlexW2033629351

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.