Evidence map›Paper›PMID 10990462›Full record

ArticleThe EMBO journal2000

Activation of the beta globin locus by transcription factors and chromatin modifiers.

T McMorrow, A van den Wijngaard, A Wollenschlaeger, M van de Corput, K Monkhorst, T Trimborn, P Fraser, M van Lohuizen, T Jenuwein, M Djabali and 3 more

Open access · greenAbstract read
In one paragraph

Article in The EMBO journal, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 51 citations in OpenAlex.

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  7. Latency, chromatin remodeling, and reactivation of human cytomegalovirus in the dendritic cells of healthy carriers.Proceedings of the National Academy of Sciences of the United States of America · 2005
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

T McMorrowDepartment of Cell Biology and Genetics, Medical Genetics Centre, Faculty of Medicine, Erasmus University Rotterdam.
A van den Wijngaard
A Wollenschlaeger
M van de Corput
K Monkhorst
T Trimborn
P Fraser
M van Lohuizen
T Jenuwein
M Djabali
S Philipsen
F Grosveld
E Milot
University College Dublin · IE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Locus control regions (LCRs) alleviate chromatin-mediated transcriptional repression. Incomplete LCRs partially lose this property when integrated in transcriptionally restrictive genomic regions such as centromeres. This frequently results in position effect variegation (PEV), i.e. the suppression of expression in a proportion of the cells. Here we show that this PEV is influenced by the heterochromatic protein SUV39H1 and by the Polycomb group proteins M33 and BMI-1. A concentration variation of these proteins modulates the proportion of cells expressing human globins in a locus-dependent manner. Similarly, the transcription factors Sp1 or erythroid Krüppel-like factor (EKLF) also influence PEV, characterized by a change in the number of expressing cells and the chromatin structure of the locus. However, in contrast to results obtained in a euchromatic locus, EKLF influences the expression of the gamma- more than the beta-globin genes, suggesting that the relief of silencing is caused by the binding of EKLF to the LCR and that genes at an LCR proximal position are more likely to be in an open chromatin state than genes at a distal position.

Indexed as

Suppression, GeneticTranscription, GeneticAnimalsCell LineChromatinChromosome MappingDeoxyribonuclease IDNA-Binding ProteinsGene SilencingGlobinsHumansIn Situ Hybridization, FluorescenceKruppel-Like Transcription FactorsLiverMethyltransferasesMiceBMI1 protein, humanBmi1 protein, mouseCbx2 protein, mouseChromatinDeoxyribonuclease IDNA-Binding Proteinserythroid Kruppel-like factorGlobinsKruppel-Like Transcription FactorsMethyltransferasesNuclear ProteinsPolycomb-Group ProteinsPolycomb Repressive Complex 1Proto-Oncogene ProteinsRepressor ProteinsRNASingle-Strand Specific DNA and RNA EndonucleasesSp1 Transcription FactorSUV39H1 protein, humanSuv39h1 protein, mouseTranscription Factors

Identifiers

PMID10990462
PMCPMC314215
OpenAlexW2095642631

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.