Evidence map›Paper›PMID 10954561›Full record

ArticleJournal of virology2000

The simian virus 40 core origin contains two separate sequence modules that support T-antigen double-hexamer assembly.

K R Sreekumar, A E Prack, D R Winters, B A Barbaro, P A Bullock

Abstract read
In one paragraph

Article in Journal of virology, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

K R SreekumarDepartment of Biochemistry, Tufts University School of Medicine, Boston, Massachusetts 02111, USA.
A E Prack
D R Winters
B A Barbaro
P A Bullock

Funding

INITIATION OF SV40 DNA REPLICATION AND ITS REGULATIONR01GM055397 · NIGMS · TUFTS UNIVERSITY BOSTON · PI BULLOCK, PETER AUGUSTUS · 1997 to 2010
$3.5M
NIGMS NIH HHS 9RO1GM 55397NIGMS NIH HHS R01 GM055397
6 · The paper itself

Abstract

Using subfragments of the simian virus 40 (SV40) core origin, we demonstrate that two alternative modules exist for the assembly of T-antigen (T-ag) double hexamers. Pentanucleotides 1 and 3 and the early palindrome (EP) constitute one assembly unit, while pentanucleotides 2 and 4 and the AT-rich region constitute a second, relatively weak, assembly unit. Related studies indicate that on the unit made up of pentanucleotide 1 and 3 and the EP assembly unit, the first hexamer forms on pentanucleotide 1 and that owing to additional protein-DNA and protein-protein interactions, the second hexamer is able to form on pentanucleotide 3. Oligomerization on the unit made up of pentanucleotide 2 and 4 and the AT-rich region is initiated by assembly of a hexamer on pentanucleotide 4; subsequent formation of the second hexamer takes place on pentanucleotide 2. Given that oligomerization on the SV40 origin is limited to double-hexamer formation, it is likely that only a single module is used for the initial assembly of T-ag double hexamers. Finally, we discuss the evidence that nucleotide hydrolysis is required for the remodeling events that result in the utilization of the second assembly unit.

Indexed as

Replication OriginVirus AssemblyAdenosine TriphosphateAdenylyl ImidodiphosphateAnimalsAntigens, Polyomavirus TransformingBase SequenceDNA, ViralModels, BiologicalMolecular Sequence DataOligonucleotidesProtein BindingSimian virus 40Viral Core ProteinsAdenosine TriphosphateAdenylyl ImidodiphosphateAntigens, Polyomavirus TransformingDNA, ViralOligonucleotidesViral Core Proteins

Identifiers

PMID10954561
PMCPMC116372

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.